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onminiasm_CUDA

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Commits on Jul 18, 2017

• check file handle from paf_open exists

  mcshane

  committed
  17dff38

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Commits on Mar 10, 2017

• r159: fixed an integer overflow via voutcn@b39d757

  lh3

  committed
  2c43500

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Commits on Jan 29, 2016

• revert a version close to r104

  lh3

  committed
  a46399a

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• removed chimeric detection - not working as intend

  lh3

  committed
  2141dc6

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Commits on Jan 25, 2016

• adjust both ml and bl after trimming

  lh3

  committed
  211f88c

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• adjust match length when trimming reads

  lh3

  committed
  974d01a

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• differet rules for "chimera" detection

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  lh3

  committed
  ddb75d1

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Commits on Dec 21, 2015

• r137: chimeric depth cutoff depends on mindp

  lh3

  committed
  ecb3167

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• don't print chimeric reads

  lh3

  committed
  e01ed49

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Commits on Dec 20, 2015

• code backup

  lh3

  committed
  e2b0376

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Commits on Dec 19, 2015

• r131: optionally prefilter contained reads

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  lh3

  committed
  116b053

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Commits on Nov 24, 2015

• r103: with -B, don't reverse self matches

  lh3

  committed
  d10db9a

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Commits on Nov 19, 2015

• r98: a bit code simplification

  lh3

  committed
  9f6c8a5

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Commits on Nov 17, 2015

• r92: make min_dp in 2nd-round filtering not so low

  lh3

  committed
  5f5c00e

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Commits on Nov 14, 2015

• r86: added -B

  lh3

  committed
  a53537d

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Commits on Nov 6, 2015

• backup

  lh3

  committed
  8a8b373

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• store hits with low identity

  lh3

  committed
  a25612f

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• backup

  lh3

  committed
  9dd534f

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• backup

  lh3

  committed
  95af79c

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• backup

  lh3

  committed
  26245a8

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• backup

  lh3

  committed
  34fbc5c

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• added back end clip

  lh3

  committed
  57ba4ed

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• two round filtering

  lh3

  committed
  8a4b113

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• fixed an off-by-one bug

  lh3

  committed
  9c849f0

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Commits on Nov 5, 2015

• backup

  lh3

  committed
  9715bc8

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• coverage

  lh3

  committed
  02f5af9

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• backup

  lh3

  committed
  56d80a3

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• cut.c => hit.c

  lh3

  committed
  77d4fab

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