A curated list of insanely awesome libraries, packages and resources for systematic trading. Crypto, Stock, Futures, Options, CFDs, FX, and more | 量化交易 | 量化投资

code for Visualizing COVID19 metadata from public sources

knowledge-based genotyping of cancer hotspots from the tumor BAM files

Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

Cell Heterogeneity Accounted cLonal Methylation (CHALM)

Tookit for gtf format conversion and sequence extraction

accessory scripts for processing varscan somatic/copynumber outputs.

A template utility for R projects that provides a skeletal project.

R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE

A tool to extract ATGC/Indel read counts at user specific loci from BAM files

Generate IGV style locus tracks from bigWig files in R

Prediction of key transcription factors in cell fate determination using enhancer networks. See full ANANSE documentation for detailed installation instructions and usage examples.

A package for including transposable elements in differential enrichment analysis of sequencing datasets.

An R 📦 for fast and flexible DNA methylation analysis

ChIP-seq analysis notes from Ming Tang

An open-source, cloud-ready web application for simplified deployment of big data workflows.

Large automated pipeline for running the MeDeCom

Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.

A tool to identify, orient, trim and rescue full length cDNA reads

Figure depicting the breadth of multimodal scRNA-seq technologies

Unstructured Code for calling PMDs in DNA methylation data using change point algorithms

Snakemake pipelines for nanopore sequencing data archiving and processing

A snakemake pipeline for SV analysis from nanopore genome sequencing