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10 stars written in Shell
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A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

Shell 477 194 Updated Aug 31, 2025

3D de novo assembly (3D DNA) pipeline

Shell 224 58 Updated Nov 29, 2023

A small C and Python library for reading PLINK genotype files.

Shell 51 17 Updated Nov 27, 2024
Shell 44 7 Updated May 8, 2024

The cattle Genotype-Tissue Expression atlas v1

Shell 28 8 Updated Mar 14, 2023

Scripts that used in our chicken T2T manuscript.

Shell 22 6 Updated Jan 14, 2026

Set of script for the paper on the cattle graph genome

Shell 14 1 Updated Jan 10, 2023

Construction and representation of human pangenome graphs

Shell 9 1 Updated Oct 16, 2023

Scripts used for benchmarking study in Zhao et al. 2020 Scientific Report paper.

Shell 9 1 Updated Mar 5, 2021