LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files

GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the scenario where high quality proteins from one or several close…

Application of pan-genome for population

simuG: a general-purpose genome simulator

Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.

A pipeline for genomic variant detection with genome assemblies at population scale

We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a necessary complement to the study of genomic synteny and str…

Detection and genotyping of structural variants

🧮 🔢 Generate multi-sample k-mer count matrix from WGS

Docker image as base for building full MAKER image