Frequently-used-tools-for-data-processing

Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.

Name		Name	Last commit message	Last commit date
GBS		GBS
MyPM		MyPM
annot_tools		annot_tools
assemble_tools		assemble_tools
cmd_ctrl		cmd_ctrl
enrich		enrich
evolution_tools		evolution_tools
file_type_based		file_type_based
gm_tools		gm_tools
log_tools		log_tools
maker_pm_edit		maker_pm_edit
pcr_tools		pcr_tools
plotting		plotting
project/watermelon_pan_phaseI		project/watermelon_pan_phaseI
relate_loc_1to1		relate_loc_1to1
reseq_tools		reseq_tools
rnaseq_tools		rnaseq_tools
rscript_examples		rscript_examples
sample_scripts		sample_scripts
self_interest		self_interest
site_search		site_search
software_fix		software_fix
temp		temp
tests		tests
.gitignore		.gitignore
ColLink.pl		ColLink.pl
LICENSE		LICENSE
README.md		README.md
REFACTOR_LOG.md		REFACTOR_LOG.md
SCRIPTS_INDEX.md		SCRIPTS_INDEX.md
audit_undef_subs.pl		audit_undef_subs.pl
bp0_2_bp6.pl		bp0_2_bp6.pl
calc_est_in_psl.pl		calc_est_in_psl.pl
cnvrt_embl_to_fasta.pl		cnvrt_embl_to_fasta.pl
deal_augustus.pl		deal_augustus.pl
deal_bnx.pl		deal_bnx.pl
deal_fasta.pl		deal_fasta.pl
deal_fastq.pl		deal_fastq.pl
deal_iprscan.pl		deal_iprscan.pl
deal_table.pl		deal_table.pl
drop_dup_both_end.pl		drop_dup_both_end.pl
drop_dup_single.pl		drop_dup_single.pl
extract_fq_by_list.pl		extract_fq_by_list.pl
follow_mcscan.pl		follow_mcscan.pl
gen_script_index.sh		gen_script_index.sh
run_clean_mp_all.R		run_clean_mp_all.R
run_cmd_in_batch.pl		run_cmd_in_batch.pl
run_reapr.sh		run_reapr.sh
sam_filter.pl		sam_filter.pl
sam_flag_chk.pl		sam_flag_chk.pl
save_mate_fq.pl		save_mate_fq.pl
save_single_fq.pl		save_single_fq.pl
sepRun_cmd.pl		sepRun_cmd.pl
solQ2phredQ.pl		solQ2phredQ.pl

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