Stars
Data validation using Python type hints
Interactive Data Visualization in the browser, from Python
A framework for managing and maintaining multi-language pre-commit hooks.
dnscrypt-proxy 2 - A flexible DNS proxy, with support for encrypted DNS protocols.
Official git repository for Biopython (originally converted from CVS)
Singularity has been renamed to Apptainer as part of us moving the project to the Linux Foundation. This repo has been persisted as a snapshot right before the changes.
🪼 a python library for doing approximate and phonetic matching of strings.
A versatile pairwise aligner for genomic and spliced nucleotide sequences
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
Specification for the Workflow Description Language (WDL).
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy)
Miscellaneous collection of Python and R scripts for processing Iso-Seq data
Tool for the Quality Control of Long-Read Defined Transcriptomes
Full-Length Alternative Isoform analysis of RNA
Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
Workflow Description Language developer tools & local runner
Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
Plugins for the Ensembl Variant Effect Predictor (VEP)
Technology agnostic long read analysis pipeline for transcriptomes
CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)