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PDF Parser for AI-ready data. Automate PDF accessibility. Open-source.
🧬 gget enables efficient querying of genomic reference databases
isayevlab / RitS
Forked from isayevlab/LoQIRight into the Saddle: Stereochemistry-Aware Generation of Molecular Transition States
This is repository for "A unified framework for automated transition state generation to accelerate mechanistic exploration in organic synthesis"
The official Lark/Feishu CLI tool, maintained by the larksuite team — built for humans and AI Agents. Covers core business domains including Messenger, Docs, Base, Sheets, Calendar, Mail, Tasks, Me…
AlphaFast: ultra-high-throughput AlphaFold3 inference with MMSeqs2-GPU
CUDA Agent: Large-Scale Agentic RL for High-Performance CUDA Kernel Generation
One Hub All LLMs For You | 为个人打造的 LLM API 聚合网关
Biomni: a general-purpose biomedical AI agent
OpenBioLink is a resource and evaluation framework for evaluating link prediction models on heterogeneous biomedical graph data.
LLM-KG4QA: Large Language Models and Knowledge Graphs for Question Answering
Implement a system to use GNN and/or LLM to use knowledge graphs to integrate literature with knowledge graphs made from large public datasets (CIVIC, TCGA, CPTAC)
VCWorld: A Biological World Model for Virtual Cell Simulation
Comprehensive Resource of Biomedical Relations with Deep Learning Applications and Knowledge Graph Representations
Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotations and intercellular communication roles.
This is the repo for CROssBARv2 Knowledge Graph data. CROssBARv2 is a heterogeneous general-purpose biomedical KG-based system.
Identifying compound-protein interactions with knowledge graph embedding of perturbation transcriptomics
A unifying framework for biomedical research knowledge graphs
Backend library for conversational AI in biomedicine