Evolvable, distributed agent framework & harness for data science.

scDIOR: Single cell data IO softwaRe

R package for Pathway RespOnsive GENe activity inference

Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:

Your own personal AI assistant. Any OS. Any Platform. The lobster way. 🦞

A mathematical model for trans effect of 3'UTR shortening in ceRNA

This repository includes the official implementation of OpenScholar: Synthesizing Scientific Literature with Retrieval-augmented LMs.

A collection of 50+ trajectory inference methods within a common interface 📥📤

ASTWAS: Modeling alternative polyadenylation and SNP Effects in Kernel-Driven TWAS reveals novel genetic associations for complex traits

This dataset represents the Glioblastoma Resistance Insights from Treatment Atlas (GRIT-Atlas), the most comprehensive single-cell and spatially resolved resource for IDH-wildtype glioblastoma (GBM…

Predicting small molecule and RNA target interactions using deep neural networks (Nature Biotechnology, 2026)

Aberrant basal cell clonal expansions shape early lung carcinogenesis

Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.

Create KEGG.db Package

Methods for decontamination of single cell data

Transformer for One-Stop Interpretable Cell-type Annotation

CellNavi is a deep learning framework designed to predict genes driving cellular transitions.

Precision HLA typing from next-generation sequencing data

Pipeline to identify isoforms from full-length cDNA sequencing data

Full-Length Alternative Isoform analysis of RNA

CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets

APA Regression Net - Predict and Engineer Alternative Polyadenylation