Toolkit for processing sequences in FASTA/Q formats

The next version of bwa-mem

A Python GUI for the upload of NGS data to GEO

Caizzi, Monteiro-Martins (2021)

A post sequencing QC tool for Oxford Nanopore sequencers

Plotting scripts for long read sequencing data

A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt

inline-snapshot boosts efficiency when writing tests by generating code with the expected values and simplifies snapshot tests with pytest.

Code for running RFdiffusion

Restart a Linux server made of a potato laptop after power outages

This is a python script that allows for batch processing of AlphaFold3 output files

Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer). Visit FlyPredictome for large-scale AFM prediction results…

Toolbox of the Human Neural Organoid Cell Atlas

A drop-in replacement for dplyr, powered by DuckDB for speed.

This API provides programmatic access to the AlphaGenome model developed by Google DeepMind.

Plugin for folding sequences directly in PyMOL

Tools for everyday use (suited as aliases) that make atleast my life easier.

A set of tools to easily create FASTA files which can be used to generate input JSON files for alphafold3. Automatically fetching sequences and information from UniProt and NCBI.

AFusion: AlphaFold 3 GUI & Toolkit with Visualization

BigWig and BAM utilities

Modern, extensible Python project management

An Ansible playbook for automating secure server setup and configuration with sensible defaults for systems.

resources for learning bioinformatics

A collection of cards and automations for the Roborock in Home Assistant

Quick mining and visualization of NGS data by integrating genomic databases

Trinity RNA-Seq de novo transcriptome assembly