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@maxplanck-ie

Max Planck Institute of Immunobiology and Epigenetics

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  1. ATACofthesnake ATACofthesnake Public

    Differential accessibility, LRT tests and timecourse analyses for chromatin accessibility data

    Python 5 2

Repositories

Showing 10 of 40 repositories
  • BigRedButton Public

    1. Push button 2. Get results 3. Publish

    maxplanck-ie/BigRedButton's past year of commit activity
    Python 1 1 8 2 Updated Sep 22, 2026
  • dissectBCL Public

    demultiplexing pipeline

    maxplanck-ie/dissectBCL's past year of commit activity
    Python 3 2 20 2 Updated Sep 22, 2026
  • ATACofthesnake Public

    Differential accessibility, LRT tests and timecourse analyses for chromatin accessibility data

    maxplanck-ie/ATACofthesnake's past year of commit activity
    Python 5 MIT 2 0 0 Updated Sep 21, 2026
  • parkour2 Public

    Parkour2: Laboratory Information Management System 👩🏻‍🔬 🧬 👨🏽‍💻

    maxplanck-ie/parkour2's past year of commit activity
    Python 35 10 2 0 Updated Sep 21, 2026
  • snakepipes Public

    Customizable workflows based on snakemake and python for the analysis of NGS data

    maxplanck-ie/snakepipes's past year of commit activity
    Python 407 91 32 1 Updated Sep 11, 2026
  • nanoporeReads_dataTransfer Public

    A pipeline to transfer the Nanopore reads to end users

    maxplanck-ie/nanoporeReads_dataTransfer's past year of commit activity
    Python 1 MIT 3 3 0 Updated Jul 2, 2026
  • Rintro Public

    material for R-Course

    maxplanck-ie/Rintro's past year of commit activity
    R 5 GPL-3.0 4 2 0 Updated Mar 20, 2026
  • AlphaGenomeWorkshop Public

    Implementation of AlphaGenome API jupyter notebook.

    maxplanck-ie/AlphaGenomeWorkshop's past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Feb 12, 2026
  • oarfish_snakemake_workflow Public Forked from katsikora/oarfish_snakemake_workflow

    A snakemake workflow for standard and allele-specific DGE and DTE for ONT cDNA reads.

    maxplanck-ie/oarfish_snakemake_workflow's past year of commit activity
    Python 0 BSD-3-Clause 1 0 0 Updated Jan 8, 2026
  • chromHMM_snakemake_workflow Public Forked from katsikora/chromHMM_snakemake_workflow

    A snakemake workflow to produce chromHMM segmentation on input bam files.

    maxplanck-ie/chromHMM_snakemake_workflow's past year of commit activity
    Python 0 1 0 0 Updated Jan 7, 2026
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