Academic Research Skills for Claude Code: research → write → review → revise → finalize

Data intensive science for everyone.

MRtrix3 provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), probabilistic tractography, track-density imaging, and appar…

A unified library of SOTA model optimization techniques like quantization, distillation, pruning, neural architecture search, speculative decoding, etc. It compresses deep learning models for downs…

NVIDIA DLA-SW, the recipes and tools for running deep learning workloads on NVIDIA DLA cores for inference applications.

Deep Learning for humans

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dime…

Turn your coding agents into research agents

Python package to access a cacophony of neuro-imaging file formats

Fine-tune LLMs from one YAML. Layer streaming trains an 8B model on a 4 GB laptop GPU.

Single-cell analysis in Python. Scales to >100M cells.

AI Toolkit for Healthcare Imaging

🌊 The original agent meta-harness. Deploy intelligent multi-player swarms, coordinate autonomous workflows, and build conversational AI systems. Features adaptive memory, self-learning intelligence…

Agent-driven research knowledge base. Agents collect, search, and synthesize web research into a persistent, searchable wiki.

Medical imaging processing for AI applications.

Read, modify and write DICOM files with python code

dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC