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[Diff since v0.2.0](v0.2.0...v0.2.1) - Fix SpringBlock state ordering after MTK compilation (#1709) - Fix QA compatibility after v0.2 release (#1711) - Refresh IntervalNonlinearProblem dependencies (#1699) - StiffDDE: import solver algorithms explicitly (#1700) - Fix PDESystemLibrary benchmark output (#1706) - Refresh AutomaticDifferentiationSparse dependencies (#1705) - Fix NonStiffBVP orbital benchmark solves (#1703) - Refresh NonStiffDDE dependencies (#1698) - Refresh Surrogates benchmark dependencies (#1707) - StiffODE: relax LinearSolve/AlgebraicMultigrid caps to reach OrdinaryDiffEqDifferentiation 3.10 (#1676) Re-posting: the earlier registration comment produced no registry pull request. --- 🤖 Posted by an AI agent — harness: Claude Code, model: claude-opus-5[1m]. Chris asked for this release. https://claude.ai/code/session_014FEzNTLFutCmTEAZ3zBg5R **Merged pull requests:** - StiffODE: relax LinearSolve/AlgebraicMultigrid caps to reach OrdinaryDiffEqDifferentiation 3.10 (#1676) (@ChrisRackauckas) - CI: detect only benchmarks changed by each master push (#1682) (@ChrisRackauckas-Claude) - Remove obsolete StiffODE GenericSchur pin (#1693) (@ChrisRackauckas-Claude) - StiffODE: finish the runtime rescue (#1695) (@ChrisRackauckas-Claude) - Refresh NonStiffDDE solver dependencies (#1698) (@ChrisRackauckas-Claude) - Refresh IntervalNonlinearProblem dependencies (#1699) (@ChrisRackauckas-Claude) - StiffDDE: import solver algorithms explicitly (#1700) (@ChrisRackauckas-Claude) - Fix NonStiffBVP orbital benchmark validation (#1703) (@ChrisRackauckas-Claude) - Refresh AutomaticDifferentiationSparse dependencies (#1705) (@ChrisRackauckas-Claude) - Fix PDESystemLibrary benchmark output (#1706) (@ChrisRackauckas-Claude) - Refresh Surrogates benchmark dependencies (#1707) (@ChrisRackauckas-Claude) - Fix QA compatibility after v0.2 release (#1711) (@ChrisRackauckas-Claude) - Qualify the Optimization solve call (#1714) (@ChrisRackauckas-Claude) - Fix DiffEqGPU singleton grids and GPU smoke solves (#1715) (@ChrisRackauckas-Claude) - Fix PINNOptimizers DomainSets imports (#1717) (@ChrisRackauckas-Claude) - Fix PINNErrorsVsTime DomainSets imports (#1718) (@ChrisRackauckas-Claude) - Refresh NonStiffSDE dependencies (#1721) (@ChrisRackauckas-Claude) - Publish each completed benchmark immediately (#1722) (@ChrisRackauckas-Claude) - Cancel benchmark work when pull requests close (#1723) (@ChrisRackauckas-Claude) - Cancel benchmark runs when pull requests merge (#1724) (@ChrisRackauckas-Claude) - Fix Bruss work-precision solver names (#1725) (@ChrisRackauckas-Claude) - Fix E5 threaded extrapolation initialization order (#1727) (@ChrisRackauckas-Claude) - Cancel superseded PR benchmark runs outside concurrency (#1729) (@ChrisRackauckas-Claude) - Refresh Jumps dependencies and bound spatial runtime (#1730) (@ChrisRackauckas-Claude) - Remove obsolete ComplicatedPDE GenericSchur pin (#1731) (@ChrisRackauckas-Claude) - Refresh Symbolics dependencies and use public default_values (#1734) (@ChrisRackauckas-Claude) - Fix E5 threaded extrapolation order (#1735) (@ChrisRackauckas-Claude) - NeuralNetworks: restore CUDA extensions and V100 runtimes (#1736) (@ChrisRackauckas-Claude) - Remove inapplicable doc preview cleanup (#1737) (@ChrisRackauckas-Claude) - Updated AstroChem for benchmarks (#1739) (@github-actions[bot]) - Updated AutomaticDifferentiation for benchmarks (#1740) (@github-actions[bot]) - Updated AutomaticDifferentiationSparse for benchmarks (#1741) (@github-actions[bot]) - Updated AutomaticDifferentiationTuring for benchmarks (#1742) (@github-actions[bot]) - Updated BayesianInference for benchmarks (#1743) (@github-actions[bot]) - Skip oversized OPF models before construction (#1779) (@ChrisRackauckas-Claude) - Bump crate-ci/typos from 1.49.0 to 1.49.1 (#1780) (@dependabot[bot]) - Bump actions/github-script from 8 to 9 (#1781) (@dependabot[bot]) - Document Weave validation for benchmark changes (#1783) (@ChrisRackauckas-Claude) - Update SimpleHandwrittenPDE regression-fix stack (#1784) (@ChrisRackauckas-Claude) - SimpleHandwrittenPDE: restore ranges after solver fixes (#1785) (@ChrisRackauckas-Claude) - Weekly update: refresh one benchmark directory per run (#1786) (@ChrisRackauckas) - Refresh Testing benchmark dependencies (#1787) (@ChrisRackauckas-Claude) - Fix DiffEqGPU CRN smoke parameter count (#1788) (@ChrisRackauckas-Claude) - Move HybridJumps Python setup before weaving (#1790) (@ChrisRackauckas-Claude) - Fix DiffEqGPU grid tests on Julia 1.12 (#1792) (@ChrisRackauckas-Claude) - Repair Symbolics ThermalFluid benchmark (#1793) (@ChrisRackauckas-Claude) - Use eight MKL threads in DAE two-bit adder (#1794) (@ChrisRackauckas-Claude) - Refresh StiffBVP benchmark dependencies (#1795) (@ChrisRackauckas-Claude) - Remove historical Symbolics Jacobian benchmark (#1796) (@ChrisRackauckas-Claude) - Use isolated Conda Python and R for MultiLanguage benchmarks (#1801) (@ChrisRackauckas-Claude) - Update SimpleHandwrittenPDE to released KenCarp fix (#1804) (@ChrisRackauckas-Claude) - Bump V100 GPU benchmarks to CUDA.jl 6.2 (#1806) (@ChrisRackauckas-Claude) - Cancel superseded master jobs per benchmark target (#1809) (@ChrisRackauckas-Claude) - Rebuild benchmarks after support-file changes (#1810) (@ChrisRackauckas-Claude) - Reserve benchmark runners for benchmarks (#1811) (@ChrisRackauckas-Claude) - Avoid unbounded rodas run in RingModulator (#1813) (@ChrisRackauckas-Claude) - Refresh Optimization benchmark dependencies (#1814) (@ChrisRackauckas-Claude) - Fix Hénon-Heiles Taylor callback state handling (#1819) (@ChrisRackauckas-Claude) - Refresh DynamicalODE dependencies (#1821) (@ChrisRackauckas-Claude) - Refresh AutomaticDifferentiationTuring dependencies (#1822) (@ChrisRackauckas-Claude) - Repair Enright-Pryce initial conditions (#1823) (@ChrisRackauckas-Claude) - Ensure pull request closure cancels benchmark runs (#1824) (@ChrisRackauckas-Claude) - Recreate the root benchmark environment per Julia minor (#1825) (@ChrisRackauckas-Claude) - Fix Turing differential equation model iteration (#1826) (@ChrisRackauckas-Claude) - Bound HybridJumps Hawkes specialization (#1827) (@ChrisRackauckas-Claude) - Avoid rebuilding every benchmark package (#1828) (@ChrisRackauckas-Claude) - Remove unavailable Multibody benchmark (#1829) (@ChrisRackauckas-Claude) - Skip deleted benchmark files in CI detection (#1830) (@ChrisRackauckas-Claude) - Refresh NonStiffBVP dependencies (#1832) (@ChrisRackauckas-Claude) - Update DiffEqGPU linear and CRN ensemble APIs (#1833) (@ChrisRackauckas-Claude) - Fix LinearSolve cache reuse benchmark setup (#1834) (@ChrisRackauckas-Claude) - Initialize StiffSDE timing matrices (#1835) (@ChrisRackauckas) - Bump crate-ci/typos from 1.49.1 to 1.50.1 (#1837) (@dependabot[bot]) - Fix ParameterEstimation ModelingToolkit imports (re-apply of #1803) (#1839) (@ChrisRackauckas) - Release SciMLBenchmarks 0.2.1 (#1840) (@ChrisRackauckas) **Closed issues:** - HighOrderWeakSDEWorkPrecision: two weak WorkPrecisionSet plots error (DiffEqDevTools ensemble WPS + PL1WM scalar noise) (#1662)
[Diff since v0.1.3](v0.1.3...v0.2.0) - **The solver stack is no longer a dependency of this package.** `ADTypes`, `CSV`, `DataFrames`, `DiffEqDevTools`, `Git`, `LSODA`, `LinearSolve`, `MbedTLS`, `ODEInterfaceDiffEq`, `OMJulia`, `OrdinaryDiffEq`, `OrdinaryDiffEqLowOrderRK`, `OrdinaryDiffEqSDIRK`, `OrdinaryDiffEqStabilizedRK`, `Plots`, `RecursiveFactorization`, `SciMLLogging` and `Sundials` were removed from `[deps]`. `SciMLBenchmarks` is the benchmark *driver*; each benchmark folder brings its own environment. Code that relied on these being loaded transitively by `using SciMLBenchmarks` must depend on them directly. - **`IJulia` moved behind a package extension.** `open_notebooks` errors with a message telling you to run `using IJulia` first, and now accepts `args...`. - Markdown output goes through `display("text/markdown", ...)` instead of `Markdown.parse`, so footers and version info render through the display stack rather than a parsed AST. - Benchmark priority is read by `_benchmark_priority`, a small YAML front-matter scan, instead of constructing a `Weave.WeaveDoc` just to read its header — no document parse to sort the queue. - `@subprocess` resolves the environment with `Base.active_project()` and stringifies the expression directly, rather than `Pkg.project().path` plus `Base.show_unquoted`. - Dropped the phantom `SafeTestsets` `1` major from `[compat]`; the registry only has 0.0.1 and 0.1.0. **Merged pull requests:** - Spring block PDE benchmark (#571) (@luismunozheinen) - CompatHelper: add new compat entry for Graphs at version 1 for package Jumps, (keep existing compat) (#586) (@github-actions[bot]) - CompatHelper: add new compat entry for PiecewiseDeterministicMarkovProcesses at version 0.0.7 for package Jumps, (keep existing compat) (#587) (@github-actions[bot]) - CompatHelper: add new compat entry for PyCall at version 1 for package Jumps, (keep existing compat) (#588) (@github-actions[bot]) - CompatHelper: add new compat entry for Distributions at version 0.25 for package Jumps, (keep existing compat) (#589) (@github-actions[bot]) - CompatHelper: add new compat entry for Conda at version 1 for package Jumps, (keep existing compat) (#590) (@github-actions[bot]) - CoevolveSynced and Synapse benchmarks WIP (#597) (@gzagatti) - CompatHelper: bump compat for Lux to 0.5 for package PINNErrorsVsTime, (keep existing compat) (#607) (@github-actions[bot]) - CompatHelper: bump compat for Lux to 0.5 for package PINNOptimizers, (keep existing compat) (#608) (@github-actions[bot]) - CompatHelper: add new compat entry for DifferentialEquations at version 7 for package Jumps, (keep existing compat) (#609) (@github-actions[bot]) - CompatHelper: add new compat entry for Sundials at version 4 for package Jumps, (keep existing compat) (#610) (@github-actions[bot]) - Bump nonstiff ODE (#613) (@ChrisRackauckas) - bump stiff ODE (#614) (@ChrisRackauckas) - Bump BayesianInference (#615) (@ChrisRackauckas) - bump dynamical ode benchmarks (#616) (@ChrisRackauckas) - Bump bio benchmarks (#617) (@ChrisRackauckas) - bump jumps (#618) (@ChrisRackauckas) - bump pde (#619) (@xtalax) - [buildkite] Update S3 credential handling (#621) (@staticfloat) - Add LinearSolve LU benchmarks (#623) (@ChrisRackauckas) - Fix linsolve benchmark (#624) (@ChrisRackauckas) - CompatHelper: add new compat entry for BenchmarkTools at version 1 for package LinearSolve, (keep existing compat) (#625) (@github-actions[bot]) - CompatHelper: add new compat entry for Plots at version 1 for package LinearSolve, (keep existing compat) (#626) (@github-actions[bot]) - CompatHelper: add new compat entry for VectorizationBase at version 0.21 for package LinearSolve, (keep existing compat) (#627) (@github-actions[bot]) - Create sparse linear solver PDE benchmark (#628) (@ChrisRackauckas) - Add pardiso (#629) (@ChrisRackauckas) - CompatHelper: add new compat entry for Pardiso at version 0.5 for package LinearSolve, (keep existing compat) (#630) (@github-actions[bot]) - CompatHelper: add new compat entry for SciMLBenchmarks at version 0.1 for package LinearSolve, (keep existing compat) (#631) (@github-actions[bot]) - CompatHelper: add new compat entry for Sparspak at version 0.3 for package LinearSolve, (keep existing compat) (#632) (@github-actions[bot]) - CompatHelper: bump compat for NLopt to 1 for package ParameterEstimation, (keep existing compat) (#633) (@github-actions[bot]) - New sections: Interval rootfinding, nonlinear solvers, BVPs, and optimization (#635) (@ChrisRackauckas) - CompatHelper: add new compat entry for NonlinearSolve at version 1 for package IntervalNonlinearProblem, (keep existing compat) (#636) (@github-actions[bot]) - CompatHelper: add new compat entry for Roots at version 2 for package IntervalNonlinearProblem, (keep existing compat) (#637) (@github-actions[bot]) - CompatHelper: add new compat entry for BenchmarkTools at version 1 for package IntervalNonlinearProblem, (keep existing compat) (#638) (@github-actions[bot]) - Seed the start of a few new benchmark classes (#639) (@ChrisRackauckas) - CompatHelper: add new compat entry for BenchmarkTools at version 1 for package NonStiffBVP, (keep existing compat) (#641) (@github-actions[bot]) - CompatHelper: add new compat entry for BoundaryValueDiffEq at version 3 for package NonStiffBVP, (keep existing compat) (#642) (@github-actions[bot]) - CompatHelper: add new compat entry for OrdinaryDiffEq at version 6 for package NonStiffBVP, (keep existing compat) (#643) (@github-actions[bot]) - CompatHelper: add new compat entry for NonlinearSolveMINPACK at version 0.1 for package NonlinearProblem, (keep existing compat) (#644) (@github-actions[bot]) - CompatHelper: add new compat entry for SimpleNonlinearSolve at version 0.1 for package NonlinearProblem, (keep existing compat) (#645) (@github-actions[bot]) - CompatHelper: add new compat entry for NonlinearSolve at version 1 for package NonlinearProblem, (keep existing compat) (#646) (@github-actions[bot]) - CompatHelper: add new compat entry for Sundials at version 4 for package NonlinearProblem, (keep existing compat) (#647) (@github-actions[bot]) - CompatHelper: add new compat entry for StaticArrays at version 1 for package NonlinearProblem, (keep existing compat) (#648) (@github-actions[bot]) - CompatHelper: add new compat entry for BenchmarkTools at version 1 for package NonlinearProblem, (keep existing compat) (#649) (@github-actions[bot]) - CompatHelper: add new compat entry for SciMLNLSolve at version 0.1 for package NonlinearProblem, (keep existing compat) (#650) (@github-actions[bot]) - CompatHelper: add new compat entry for Zygote at version 0.6 for package Optimizaton, (keep existing compat) (#651) (@github-actions[bot]) - CompatHelper: add new compat entry for BenchmarkTools at version 1 for package Optimizaton, (keep existing compat) (#652) (@github-actions[bot]) - CompatHelper: add new compat entry for OptimizationEvolutionary at version 0.1 for package Optimizaton, (keep existing compat) (#653) (@github-actions[bot]) - CompatHelper: add new compat entry for OptimizationNLopt at version 0.1 for package Optimizaton, (keep existing compat) (#654) (@github-actions[bot]) - CompatHelper: add new compat entry for OptimizationOptimisers at version 0.1 for package Optimizaton, (keep existing compat) (#655) (@github-actions[bot]) - CompatHelper: add new compat entry for OptimizationBBO at version 0.1 for package Optimizaton, (keep existing compat) (#656) (@github-actions[bot]) - CompatHelper: add new compat entry for OptimizationCMAEvolutionStrategy at version 0.1 for package Optimizaton, (keep existing compat) (#657) (@github-actions[bot]) - CompatHelper: add new compat entry for OptimizationOptimJL at version 0.1 for package Optimizaton, (keep existing compat) (#658) (@github-actions[bot]) - CompatHelper: add new compat entry for Optimization at version 3 for package Optimizaton, (keep existing compat) (#659) (@github-actions[bot]) - CompatHelper: add new compat entry for ModelingToolkit at version 8 for package Optimizaton, (keep existing compat) (#660) (@github-actions[bot]) - CompatHelper: add new compat entry for ForwardDiff at version 0.10 for package Optimizaton, (keep existing compat) (#661) (@github-actions[bot]) - bump catalyst (#663) (@ChrisRackauckas) - bump bayesian benchmarks (#664) (@ChrisRackauckas) - Bump DiffEqParamEstim and update code (#665) (@Vaibhavdixit02) - CompatHelper: add new compat entry for DelimitedFiles at version 1 for package PINNErrorsVsTime, (keep existing compat) (#667) (@github-actions[bot]) - Add optimal power flow benchmark of NLP frameworks (#670) (@ChrisRackauckas) - Bump BVP to 4 (#671) (@ChrisRackauckas) - Update jump benchmarks (#672) (@isaacsas) - add tomls for synapse benchmark (#673) (@isaacsas) - CompatHelper: add new compat entry for Optimization at version 3 for package ParameterEstimation, (keep existing compat) (#674) (@github-actions[bot]) - CompatHelper: add new compat entry for OptimizationBBO at version 0.1 for package ParameterEstimation, (keep existing compat) (#675) (@github-actions[bot]) - CompatHelper: add new compat entry for OptimizationNLopt at version 0.1 for package ParameterEstimation, (keep existing compat) (#676) (@github-actions[bot]) - CompatHelper: add new compat entry for ForwardDiff at version 0.10 for package ParameterEstimation, (keep existing compat) (#677) (@github-actions[bot]) - CompatHelper: add new compat entry for DiffEqDevTools at version 2 for package ComplicatedPDE, (keep existing compat) (#679) (@github-actions[bot]) - CompatHelper: add new compat entry for ModelingToolkit at version 8 for package ComplicatedPDE, (keep existing compat) (#680) (@github-actions[bot]) - CompatHelper: add new compat entry for Sundials at version 4 for package ComplicatedPDE, (keep existing compat) (#681) (@github-actions[bot]) - CompatHelper: add new compat entry for Symbolics at version 5 for package ComplicatedPDE, (keep existing compat) (#682) (@github-actions[bot]) - CompatHelper: add new compat entry for ODEInterfaceDiffEq at version 3 for package ComplicatedPDE, (keep existing compat) (#683) (@github-actions[bot]) - CompatHelper: add new compat entry for GaussianRandomFields at version 2 for package ComplicatedPDE, (keep existing compat) (#684) (@github-actions[bot]) - CompatHelper: add new compat entry for NonlinearSolve at version 1 for package ComplicatedPDE, (keep existing compat) (#685) (@github-actions[bot]) - CompatHelper: add new compat entry for OrdinaryDiffEq at version 6 for package ComplicatedPDE, (keep existing compat) (#686) (@github-actions[bot]) - CompatHelper: add new compat entry for Plots at version 1 for package ComplicatedPDE, (keep existing compat) (#687) (@github-actions[bot]) - CompatHelper: add new compat entry for LSODA at version 0.7 for package ComplicatedPDE, (keep existing compat) (#688) (@github-actions[bot]) - CompatHelper: add new compat entry for LinearSolve at version 2 for package ComplicatedPDE, (keep existing compat) (#689) (@github-actions[bot]) - CompatHelper: add new compat entry for StableRNGs at version 1 for package ComplicatedPDE, (keep existing compat) (#690) (@github-actions[bot]) - CompatHelper: add new compat entry for LinearSolve at version 2 for package SimpleHandwrittenPDE, (keep existing compat) (#691) (@github-actions[bot]) - CompatHelper: add new compat entry for CondaPkg at version 0.2 for package OptimizationFrameworks, (keep existing compat) (#693) (@github-actions[bot]) - CompatHelper: add new compat entry for ForwardDiff at version 0.10 for package OptimizationFrameworks, (keep existing compat) (#694) (@github-actions[bot]) - CompatHelper: add new compat entry for NLPModelsIpopt at version 0.10 for package OptimizationFrameworks, (keep existing compat) (#695) (@github-actions[bot]) - CompatHelper: add new compat entry for ModelingToolkit at version 8 for package OptimizationFrameworks, (keep existing compat) (#696) (@github-actions[bot]) - CompatHelper: add new compat entry for PythonCall at version 0.9 for package OptimizationFrameworks, (keep existing compat) (#697) (@github-actions[bot]) - Refactor and Fix Optimal Powerflow Benchmark (#698) (@ChrisRackauckas) - Try new Momento fix branch for OPF benchmark (#699) (@ChrisRackauckas) - CompatHelper: add new compat entry for ConcreteStructs at version 0.2 for package OptimizationFrameworks, (keep existing compat) (#700) (@github-actions[bot]) - CompatHelper: add new compat entry for StableRNGs at version 1 for package OptimizationFrameworks, (keep existing compat) (#701) (@github-actions[bot]) - CompatHelper: add new compat entry for DataFrames at version 1 for package OptimizationFrameworks, (keep existing compat) (#702) (@github-actions[bot]) - CompatHelper: add new compat entry for BenchmarkTools at version 1 for package OptimizationFrameworks, (keep existing compat) (#703) (@github-actions[bot]) - CompatHelper: add new compat entry for PrettyTables at version 2 for package OptimizationFrameworks, (keep existing compat) (#704) (@github-actions[bot]) - Bump actions/checkout from 3 to 4 (#705) (@dependabot[bot]) - Setup a Memento-free fork of PowerModels for OPF Benchmark (#706) (@ChrisRackauckas) - Setup the full OPF benchmark download (#708) (@ChrisRackauckas) - Print more information in final OPF table (#709) (@ChrisRackauckas) - Fix extrapolation methods plots for better visibility (#711) (@utkarsh530) - CompatHelper: add new compat entry for Enzyme at version 0.11 for package OptimizationFrameworks, (keep existing compat) (#712) (@github-actions[bot]) - Fix HybridJumps and Jumps dependencies (#714) (@gzagatti) - OPF: Use `AutoSparseReverseDiff` (#715) (@Vaibhavdixit02) - Improve OPF printing by removing wrapping (#716) (@ChrisRackauckas) - fix opf printing with iobuffer (#717) (@ChrisRackauckas) - bump up the OPF benchmark size (#718) (@ChrisRackauckas) - Add `RDirect` to the benchmarks. (#719) (@Vilin97) - Bump OPF benchmark size to 1000 (#720) (@ChrisRackauckas) - New Nonlinear solver benchmarks with WP diagrams for 23 test problems (#721) (@TorkelE) - Fix OPF case printing (#723) (@ChrisRackauckas) - CompatHelper: add new compat entry for SciMLBenchmarks at version 0.1 for package NonlinearProblem, (keep existing compat) (#724) (@github-actions[bot]) - CompatHelper: add new compat entry for SimpleNonlinearSolve at version 0.1 for package NonlinearProblem, (keep existing compat) (#725) (@github-actions[bot]) - CompatHelper: add new compat entry for Sundials at version 4 for package NonlinearProblem, (keep existing compat) (#726) (@github-actions[bot]) - CompatHelper: add new compat entry for StaticArrays at version 1 for package NonlinearProblem, (keep existing compat) (#727) (@github-actions[bot]) - CompatHelper: add new compat entry for BenchmarkTools at version 1 for package NonlinearProblem, (keep existing compat) (#728) (@github-actions[bot]) - CompatHelper: add new compat entry for NonlinearSolve at version 1 for package NonlinearProblem, (keep existing compat) (#729) (@github-actions[bot]) - CompatHelper: add new compat entry for Plots at version 1 for package NonlinearProblem, (keep existing compat) (#730) (@github-actions[bot]) - CompatHelper: add new compat entry for SciMLNLSolve at version 0.1 for package NonlinearProblem, (keep existing compat) (#731) (@github-actions[bot]) - CompatHelper: add new compat entry for NonlinearProblemLibrary at version 0.1 for package NonlinearProblem, (keep existing compat) (#732) (@github-actions[bot]) - CompatHelper: add new compat entry for NonlinearSolveMINPACK at version 0.1 for package NonlinearProblem, (keep existing compat) (#733) (@github-actions[bot]) - CompatHelper: add new compat entry for DiffEqDevTools at version 2 for package NonlinearProblem, (keep existing compat) (#734) (@github-actions[bot]) - Remove sparse from NLPModels (#735) (@ChrisRackauckas) - Update NonlinearSolve benchmarks (#738) (@TorkelE) - Update optimal_powerflow.jmd (#740) (@Vaibhavdixit02) - Fix typo. (#741) (@Vilin97) - add new methods (#745) (@TorkelE) - CompatHelper: bump compat for IntegralsCuba to 0.3 for package PINNErrorsVsTime, (keep existing compat) (#746) (@github-actions[bot]) - CompatHelper: bump compat for AlgebraicMultigrid to 0.6 for package StiffODE, (keep existing compat) (#747) (@github-actions[bot]) - [OPF] Move some stuff in Optimization.jl implementation into model building (#752) (@Vaibhavdixit02) - Update Optimization version (#753) (@Vaibhavdixit02) - [OPF] Add the MTK implementation as well (#754) (@Vaibhavdixit02) - update environment (#755) (@TorkelE) - CompatHelper: bump compat for NonlinearSolve to 2 for package ComplicatedPDE, (keep existing compat) (#756) (@github-actions[bot]) - CompatHelper: bump compat for NonlinearSolve to 2 for package IntervalNonlinearProblem, (keep existing compat) (#757) (@github-actions[bot]) - CompatHelper: bump compat for MethodOfLines to 0.10 for package StiffODE, (keep existing compat) (#758) (@github-actions[bot]) - update nl benchmarks (#759) (@TorkelE) - CompatHelper: bump compat for BoundaryValueDiffEq to 5 for package NonStiffBVP, (keep existing compat) (#760) (@github-actions[bot]) - Update nonlinear solver benchmarks (#761) (@TorkelE) - CompatHelper: add new compat entry for PrettyTables at version 2 for package NonlinearProblem, (keep existing compat) (#762) (@github-actions[bot]) - Add benchmarks for linear BVPs (#763) (@ErikQQY) - [OPF] Report mtk results (#764) (@Vaibhavdixit02) - Update Manifest for Nonlinear Problem (#767) (@avik-pal) - Improve plot display (#770) (@TorkelE) - CompatHelper: bump compat for DomainSets to 0.7 for package MethodOfLinesPDE, (keep existing compat) (#771) (@github-actions[bot]) - CompatHelper: bump compat for DomainSets to 0.7 for package SimpleHandwrittenPDE, (keep existing compat) (#772) (@github-actions[bot]) - Improve NL solve benchmarks (#774) (@TorkelE) - Bump BVProblemLibrary and update BVP Manifest (#776) (@ErikQQY) - CompatHelper: add new compat entry for LinearSolve at version 2 for package NonlinearProblem, (keep existing compat) (#777) (@github-actions[bot]) - Improve linear BVP benchmarks (#778) (@ErikQQY) - CompatHelper: add new compat entry for Statistics at version 1 for package DynamicalODE, (keep existing compat) (#779) (@github-actions[bot]) - CompatHelper: add new compat entry for Statistics at version 1 for package Jumps, (keep existing compat) (#780) (@github-actions[bot]) - CompatHelper: add new compat entry for Statistics at version 1 for package StiffSDE, (keep existing compat) (#781) (@github-actions[bot]) - Updates manifest for Julia 1.9.3 (#782) (@TorkelE) - Change typeof(x) <: y to x isa y (#783) (@pepijndevos) - CompatHelper: bump compat for Integrals to 4 for package PINNErrorsVsTime, (keep existing compat) (#784) (@github-actions[bot]) - Fix type instability from non-constant global (#786) (@avik-pal) - CompatHelper: bump compat for SimpleNonlinearSolve to 1 for package NonlinearProblem, (keep existing compat) (#787) (@github-actions[bot]) - typos CI (#788) (@ArnoStrouwen) - Bump actions/checkout from 3 to 4 (#789) (@dependabot[bot]) - Add battery example to NonlinearProblem + Updates for NonlinearSolve v3 (#792) (@avik-pal) - CompatHelper: bump compat for NonlinearSolve to 3 for package IntervalNonlinearProblem, (keep existing compat) (#794) (@github-actions[bot]) - Use Inf Norm and Make the Plots Prettier (#800) (@avik-pal) - Try merging the projects (#801) (@avik-pal) - CompatHelper: bump compat for Turing to 0.30 for package BayesianInference, (keep existing compat) (#802) (@github-actions[bot]) - CompatHelper: bump compat for OptimizationMOI to 0.2 for package OptimizationFrameworks, (keep existing compat) (#803) (@github-actions[bot]) - add PT to 23 NonlinearProblem tests (#804) (@yonatanwesen) - Make sure PT is included in Plots (#805) (@yonatanwesen) - Fix plots (#806) (@yonatanwesen) - Add the quadratic root finding benchmarks back (#807) (@avik-pal) - CompatHelper: add new compat entry for SpeedMapping at version 0.3 for package NonlinearProblem, (keep existing compat) (#808) (@github-actions[bot]) - Standardize the NonlinearProblem Plots (#809) (@avik-pal) - CompatHelper: bump compat for OptimizationMOI to 0.3 for package OptimizationFrameworks, (keep existing compat) (#812) (@github-actions[bot]) - CompatHelper: bump compat for OptimizationNLopt to 0.2 for package Optimizaton, (keep existing compat) (#813) (@github-actions[bot]) - CompatHelper: bump compat for OptimizationEvolutionary to 0.2 for package Optimizaton, (keep existing compat) (#814) (@github-actions[bot]) - CompatHelper: bump compat for OptimizationCMAEvolutionStrategy to 0.2 for package Optimizaton, (keep existing compat) (#815) (@github-actions[bot]) - CompatHelper: bump compat for OptimizationOptimJL to 0.2 for package Optimizaton, (keep existing compat) (#816) (@github-actions[bot]) - CompatHelper: bump compat for OptimizationOptimisers to 0.2 for package Optimizaton, (keep existing compat) (#817) (@github-actions[bot]) - CompatHelper: bump compat for OptimizationBBO to 0.2 for package Optimizaton, (keep existing compat) (#818) (@github-actions[bot]) - CompatHelper: bump compat for OptimizationOptimJL to 0.2 for package PINNErrorsVsTime, (keep existing compat) (#819) (@github-actions[bot]) - CompatHelper: bump compat for OptimizationFlux to 0.2 for package PINNErrorsVsTime, (keep existing compat) (#820) (@github-actions[bot]) - CompatHelper: bump compat for OptimizationFlux to 0.2 for package PINNOptimizers, (keep existing compat) (#821) (@github-actions[bot]) - CompatHelper: bump compat for OptimizationOptimJL to 0.2 for package PINNOptimizers, (keep existing compat) (#822) (@github-actions[bot]) - CompatHelper: bump compat for OptimizationBBO to 0.2 for package ParameterEstimation, (keep existing compat) (#823) (@github-actions[bot]) - CompatHelper: bump compat for OptimizationNLopt to 0.2 for package ParameterEstimation, (keep existing compat) (#824) (@github-actions[bot]) - Bump crate-ci/typos from 1.16.23 to 1.17.0 (#826) (@dependabot[bot]) - Add an appendix to the OPF of the compute environment (#828) (@ChrisRackauckas) - Add appendix to quadratic nonlinear benchmark (#829) (@ChrisRackauckas) - Bump to 1.10 (#831) (@avik-pal) - Testing the new NonlinearSolve.jl Performance (#832) (@avik-pal) - CompatHelper: add new compat entry for PolyesterForwardDiff at version 0.1 for package NonlinearProblem, (keep existing compat) (#833) (@github-actions[bot]) - CompatHelper: add new compat entry for SparseDiffTools at version 2 for package NonlinearProblem, (keep existing compat) (#834) (@github-actions[bot]) - Add OptimizationFrameworks/clnlbeam.jmd (#836) (@odow) - Fix NonlinearProblem builds (#837) (@avik-pal) - Adding Surrogates Benchmarks (#838) (@Spinachboul) - [WIP] Fix 23 Test Problems Benchmarking (#839) (@avik-pal) - docs: fix typos in HybridJumps/Synapse.jmd (#840) (@sathvikbhagavan) - CompatHelper: add new compat entry for Setfield at version 1 for package NonlinearProblem, (keep existing compat) (#841) (@github-actions[bot]) - CompatHelper: add new compat entry for Statistics at version 1 for package Surrogates, (keep existing compat) (#842) (@github-actions[bot]) - CompatHelper: add new compat entry for SurrogatesRandomForest at version 0.1 for package Surrogates, (keep existing compat) (#843) (@github-actions[bot]) - CompatHelper: add new compat entry for Plots at version 1 for package Surrogates, (keep existing compat) (#844) (@github-actions[bot]) - CompatHelper: add new compat entry for Surrogates at version 6 for package Surrogates, (keep existing compat) (#845) (@github-actions[bot]) - CompatHelper: add new compat entry for BenchmarkTools at version 1 for package Surrogates, (keep existing compat) (#846) (@github-actions[bot]) - CompatHelper: add new compat entry for PrettyTables at version 2 for package Surrogates, (keep existing compat) (#847) (@github-actions[bot]) - Bump crate-ci/typos from 1.17.0 to 1.18.0 (#848) (@dependabot[bot]) - [skip ci] Update dependabot.yml (#849) (@ArnoStrouwen) - Bring SimpleNonlinearSolve back to latest release (#850) (@avik-pal) - CompatHelper: add new compat entry for Symbolics at version 5 for package NonlinearProblem, (keep existing compat) (#852) (@github-actions[bot]) - CompatHelper: add new compat entry for StableRNGs at version 1 for package NonlinearProblem, (keep existing compat) (#853) (@github-actions[bot]) - CompatHelper: add new compat entry for CairoMakie at version 0.11 for package NonlinearProblem, (keep existing compat) (#854) (@github-actions[bot]) - CompatHelper: add new compat entry for SimpleNonlinearSolve at version 1 for package NonlinearProblem, (keep existing compat) (#855) (@github-actions[bot]) - CompatHelper: add new compat entry for PolyesterForwardDiff at version 0.1 for package NonlinearProblem, (keep existing compat) (#856) (@github-actions[bot]) - Brusselator Benchmarks [Take III] (#857) (@avik-pal) - Make the LinearSolve default really fast (#858) (@avik-pal) - Surrogates: add Python SMT Models in the benchmark (#860) (@sathvikbhagavan) - More Brusselator Benchmarks (#861) (@avik-pal) - Typo in the quadratic benchmark title (#863) (@avik-pal) - CompatHelper: add new compat entry for IncompleteLU at version 0.2 for package NonlinearProblem, (keep existing compat) (#864) (@github-actions[bot]) - CompatHelper: add new compat entry for AlgebraicMultigrid at version 0.6 for package NonlinearProblem, (keep existing compat) (#865) (@github-actions[bot]) - Add COLNEW benchmark (#880) (@ErikQQY) - [WIP] Update the manifest and add default polyalg (#882) (@avik-pal) - Move the legends around (#883) (@avik-pal) - [WIP] Fix ordering (#884) (@avik-pal) - Try larger grid sizes (#885) (@avik-pal) - Test with new BVP (#886) (@avik-pal) - Add a section for automatic differentiation benchmarks (#892) (@ChrisRackauckas) - Fix DifferentiationInterface loading in AD benchmarks (#893) (@gdalle) - Add ODE AD Benchmarks (#894) (@ChrisRackauckas) - Bump julia-actions/setup-julia from 1 to 2 (#895) (@dependabot[bot]) - Nicer AD benchmark table (#896) (@gdalle) - CompatHelper: add new compat entry for DataFrames at version 1 for package AutomaticDifferentiation, (keep existing compat) (#897) (@github-actions[bot]) - CompatHelper: add new compat entry for DifferentiationInterface at version 0.1 for package AutomaticDifferentiation, (keep existing compat) (#898) (@github-actions[bot]) - CompatHelper: add new compat entry for Zygote at version 0.6 for package AutomaticDifferentiation, (keep existing compat) (#899) (@github-actions[bot]) - CompatHelper: add new compat entry for PrettyTables at version 2 for package AutomaticDifferentiation, (keep existing compat) (#900) (@github-actions[bot]) - CompatHelper: add new compat entry for DataFramesMeta at version 0.15 for package AutomaticDifferentiation, (keep existing compat) (#901) (@github-actions[bot]) - CompatHelper: add new compat entry for Enzyme at version 0.11 for package AutomaticDifferentiation, (keep existing compat) (#902) (@github-actions[bot]) - CompatHelper: add new compat entry for Tapir at version 0.1 for package AutomaticDifferentiation, (keep existing compat) (#903) (@github-actions[bot]) - CompatHelper: add new compat entry for SciMLBenchmarks at version 0.1 for package AutomaticDifferentiation, (keep existing compat) (#904) (@github-actions[bot]) - CompatHelper: add new compat entry for BenchmarkTools at version 1 for package AutomaticDifferentiation, (keep existing compat) (#905) (@github-actions[bot]) - CompatHelper: add new compat entry for ForwardDiff at version 0.10 for package AutomaticDifferentiation, (keep existing compat) (#906) (@github-actions[bot]) - CompatHelper: add new compat entry for ReverseDiff at version 1 for package AutomaticDifferentiation, (keep existing compat) (#907) (@github-actions[bot]) - CompatHelper: add new compat entry for StaticArrays at version 1 for package AutomaticDifferentiation, (keep existing compat) (#908) (@github-actions[bot]) - CompatHelper: add new compat entry for OrdinaryDiffEq at version 6 for package AutomaticDifferentiation, (keep existing compat) (#909) (@github-actions[bot]) - CompatHelper: add new compat entry for SciMLSensitivity at version 7 for package AutomaticDifferentiation, (keep existing compat) (#910) (@github-actions[bot]) - CompatHelper: add new compat entry for ParameterizedFunctions at version 5 for package AutomaticDifferentiation, (keep existing compat) (#911) (@github-actions[bot]) - CompatHelper: add new compat entry for Plots at version 1 for package AutomaticDifferentiation, (keep existing compat) (#912) (@github-actions[bot]) - CompatHelper: add new compat entry for Tracker at version 0.2 for package AutomaticDifferentiation, (keep existing compat) (#913) (@github-actions[bot]) - CompatHelper: add new compat entry for FiniteDiff at version 2 for package AutomaticDifferentiation, (keep existing compat) (#914) (@github-actions[bot]) - CompatHelper: bump compat for Enzyme to 0.12 for package AutomaticDifferentiation, (keep existing compat) (#915) (@github-actions[bot]) - CompatHelper: bump compat for Enzyme to 0.12 for package OptimizationFrameworks, (keep existing compat) (#916) (@github-actions[bot]) - Fixed typos (#917) (@Spinachboul) - CompatHelper: add new compat entry for DifferentiationInterfaceTest at version 0.1 for package AutomaticDifferentiation, (keep existing compat) (#918) (@github-actions[bot]) - [WIP] Fix OPF files reading issue (#921) (@Vaibhavdixit02) - CompatHelper: bump compat for OptimizationEvolutionary to 0.3 for package Optimizaton, (keep existing compat) (#922) (@github-actions[bot]) - Update AD benchmark to DifferentiationInterface v0.2 (#923) (@gdalle) - Added MatrixDepot.jmd file to run benchmarks on sparse matrices (#926) (@anastasia21112) - CompatHelper: add new compat entry for MatrixDepot at version 1 for package LinearSolve, (keep existing compat) (#927) (@github-actions[bot]) - add clarification for SciMLBenchmarksOutput readme (#930) (@paulflang) - Added thermal fluid MTK and JuliaSimCompiler benchmark. (#939) (@chriselrod) - ci: authenticate with JuliaHubRegistry for benchmarking JuliaHub's JuliaSim packages (#940) (@thazhemadam) - CompatHelper: bump compat for OptimizationOptimJL to 0.3 for package Optimizaton, (keep existing compat) (#944) (@github-actions[bot]) - CompatHelper: bump compat for OptimizationOptimJL to 0.3 for package PINNErrorsVsTime, (keep existing compat) (#945) (@github-actions[bot]) - CompatHelper: bump compat for OptimizationOptimJL to 0.3 for package PINNOptimizers, (keep existing compat) (#946) (@github-actions[bot]) - Add Modelica code to ThermalFluid Benchmark (#949) (@ChrisRackauckas) - add robot benchmark (#951) (@baggepinnen) - RC Circuit MTK and JSIR example. (#954) (@chriselrod) - Reformat RCCircuit a bit (#955) (@ChrisRackauckas) - Fix a few things in the MTK benchmarks (#962) (@ChrisRackauckas) - CompatHelper: add new compat entry for DataFrames at version 1, (keep existing compat) (#963) (@github-actions[bot]) - CompatHelper: add new compat entry for CSV at version 0.10, (keep existing compat) (#964) (@github-actions[bot]) - CompatHelper: add new compat entry for OMJulia at version 0.3, (keep existing compat) (#965) (@github-actions[bot]) - CompatHelper: add new compat entry for DataFrames at version 1 for package ModelingToolkit, (keep existing compat) (#966) (@github-actions[bot]) - CompatHelper: add new compat entry for CSV at version 0.10 for package ModelingToolkit, (keep existing compat) (#967) (@github-actions[bot]) - CompatHelper: add new compat entry for ModelingToolkitStandardLibrary at version 2 for package ModelingToolkit, (keep existing compat) (#968) (@github-actions[bot]) - fix: add more dymola times, use a tolerance of 1e-6 (#969) (@avinashresearch1) - remove ODE.jl, update solver versions (#970) (@oscardssmith) - Only use autodiff for the Julia backend (#971) (@chriselrod) - Bump MTK Benchmarks (#976) (@ChrisRackauckas) - MTK Benchmark Fixes (#977) (@chriselrod) - MTK Benchmarks (#978) (@ChrisRackauckas) - Loop through suite sparse matrices and run benchmarks (#980) (@anastasia21112) - ThermalFluid script fix (#981) (@chriselrod) - A few improvements to MatrixDepot benchmarks (#982) (@ChrisRackauckas) - Add percentage sparsity and matrix size plots (#983) (@ChrisRackauckas) - CompatHelper: add new compat entry for Statistics at version 1 for package LinearSolve, (keep existing compat) (#984) (@github-actions[bot]) - Further fixes for MTK Benchmarks (#985) (@chriselrod) - Loop over all classes of matrices (#986) (@anastasia21112) - Add LLVM and C backend targets to multibody robot benchmarks (#987) (@ChrisRackauckas) - Update AD comparison (#988) (@gdalle) - Add sparse AD comparison (#989) (@gdalle) - CompatHelper: bump compat for DifferentiationInterfaceTest to 0.5 for package AutomaticDifferentiation, (keep existing compat) (#990) (@github-actions[bot]) - CompatHelper: add new compat entry for ForwardDiff at version 0.10 for package AutomaticDifferentiationSparse, (keep existing compat) (#991) (@github-actions[bot]) - CompatHelper: add new compat entry for SparseConnectivityTracer at version 0.5 for package AutomaticDifferentiationSparse, (keep existing compat) (#992) (@github-actions[bot]) - CompatHelper: add new compat entry for DataFrames at version 1 for package AutomaticDifferentiationSparse, (keep existing compat) (#993) (@github-actions[bot]) - CompatHelper: add new compat entry for DifferentiationInterface at version 0.5 for package AutomaticDifferentiationSparse, (keep existing compat) (#994) (@github-actions[bot]) - CompatHelper: add new compat entry for Symbolics at version 5 for package AutomaticDifferentiationSparse, (keep existing compat) (#995) (@github-actions[bot]) - CompatHelper: add new compat entry for SparseDiffTools at version 2 for package AutomaticDifferentiationSparse, (keep existing compat) (#996) (@github-actions[bot]) - CompatHelper: add new compat entry for ADTypes at version 1 for package AutomaticDifferentiationSparse, (keep existing compat) (#997) (@github-actions[bot]) - CompatHelper: add new compat entry for BenchmarkTools at version 1 for package AutomaticDifferentiationSparse, (keep existing compat) (#998) (@github-actions[bot]) - CompatHelper: add new compat entry for SparseMatrixColorings at version 0.3 for package AutomaticDifferentiationSparse, (keep existing compat) (#999) (@github-actions[bot]) - CompatHelper: add new compat entry for Zygote at version 0.6 for package AutomaticDifferentiationSparse, (keep existing compat) (#1000) (@github-actions[bot]) - Summary plots on Brusselator sparse AD benchmarks (#1001) (@gdalle) - CompatHelper: add new compat entry for PreallocationTools at version 0.4 for package AutomaticDifferentiationSparse, (keep existing compat) (#1003) (@github-actions[bot]) - CompatHelper: add new compat entry for Weave at version 0.10 for package AutomaticDifferentiationSparse, (keep existing compat) (#1004) (@github-actions[bot]) - CompatHelper: add new compat entry for Plots at version 1 for package AutomaticDifferentiationSparse, (keep existing compat) (#1005) (@github-actions[bot]) - Transistor Amplifier Benchmark added. (#1007) (@maxesit) - Bump stiff ODE benchmarks (#1012) (@ChrisRackauckas) - Bump all versions in optimizationframeworks benchmarks (#1015) (@Vaibhavdixit02) - Test latest stiff solvers (#1020) (@ChrisRackauckas) - bump nonstiff ode solver benchmarks (#1021) (@ChrisRackauckas) - Bump Bio for Catalyst v14 and MTK v9 (#1022) (@ChrisRackauckas) - Allow some more matrices (#1024) (@ChrisRackauckas) - CompatHelper: bump compat for Symbolics to 6 for package AutomaticDifferentiationSparse, (keep existing compat) (#1027) (@github-actions[bot]) - CompatHelper: bump compat for Symbolics to 6 for package ComplicatedPDE, (keep existing compat) (#1028) (@github-actions[bot]) - CompatHelper: bump compat for Symbolics to 6 for package ModelingToolkit, (keep existing compat) (#1029) (@github-actions[bot]) - CompatHelper: bump compat for Symbolics to 6 for package NonlinearProblem, (keep existing compat) (#1030) (@github-actions[bot]) - CompatHelper: bump compat for Symbolics to 6 for package OptimizationFrameworks, (keep existing compat) (#1031) (@github-actions[bot]) - CompatHelper: bump compat for Symbolics to 6 for package StiffODE, (keep existing compat) (#1032) (@github-actions[bot]) - Adding CUTEst.jl to the optimization benchmarks (#1036) (@alonsoC1s) - fix: fix testing for optimal powerflow benchmark (#1037) (@AayushSabharwal) - CompatHelper: bump compat for JLD2 to 0.5 for package Bio, (keep existing compat) (#1045) (@github-actions[bot]) - Create astrochem benchmark (#1046) (@ChrisRackauckas) - CompatHelper: bump compat for Enzyme to 0.13 for package OptimizationFrameworks, (keep existing compat) (#1049) (@github-actions[bot]) - CompatHelper: bump compat for OptimizationMOI to 0.5 for package OptimizationFrameworks, (keep existing compat) (#1050) (@github-actions[bot]) - CompatHelper: bump compat for Optimization to 4 for package OptimizationFrameworks, (keep existing compat) (#1051) (@github-actions[bot]) - Plotting Spaced out Sparsity (#1066) (@anastasia21112) - DynamicalODE Changes (#1067) (@ParamThakkar123) - Update sparse AD benchmarks (#1074) (@gdalle) - CompatHelper: add new compat entry for SparseMatrixColorings at version 0.4 for package AutomaticDifferentiationSparse, (keep existing compat) (#1075) (@github-actions[bot]) - CompatHelper: add new compat entry for SparseConnectivityTracer at version 0.6 for package AutomaticDifferentiationSparse, (keep existing compat) (#1076) (@github-actions[bot]) - perf: testing the newer nonlinear solve versions (#1077) (@avik-pal) - ci: sign treehashes (#1078) (@thazhemadam) - Update linear BVP benchmarking (#1079) (@ErikQQY) - Revert "perf: testing the newer nonlinear solve versions" (#1080) (@ChrisRackauckas) - CompatHelper: add new compat entry for ODEInterfaceDiffEq at version 3 for package AstroChem, (keep existing compat) (#1081) (@github-actions[bot]) - CompatHelper: add new compat entry for BenchmarkTools at version 1 for package AstroChem, (keep existing compat) (#1082) (@github-actions[bot]) - CompatHelper: add new compat entry for OrdinaryDiffEqCore at version 1 for package AstroChem, (keep existing compat) (#1083) (@github-actions[bot]) - CompatHelper: add new compat entry for Plots at version 1 for package AstroChem, (keep existing compat) (#1084) (@github-actions[bot]) - CompatHelper: add new compat entry for NaNMath at version 1 for package AstroChem, (keep existing compat) (#1085) (@github-actions[bot]) - CompatHelper: add new compat entry for Sundials at version 4 for package AstroChem, (keep existing compat) (#1086) (@github-actions[bot]) - CompatHelper: add new compat entry for LinearSolve at version 2 for package AstroChem, (keep existing compat) (#1087) (@github-actions[bot]) - CompatHelper: add new compat entry for LSODA at version 0.7 for package AstroChem, (keep existing compat) (#1088) (@github-actions[bot]) - CompatHelper: add new compat entry for Catalyst at version 14 for package AstroChem, (keep existing compat) (#1089) (@github-actions[bot]) - CompatHelper: add new compat entry for OrdinaryDiffEq at version 6 for package AstroChem, (keep existing compat) (#1090) (@github-actions[bot]) - CompatHelper: add new compat entry for ODEInterface at version 0.5 for package AstroChem, (keep existing compat) (#1091) (@github-actions[bot]) - CompatHelper: add new compat entry for Symbolics at version 6 for package AstroChem, (keep existing compat) (#1092) (@github-actions[bot]) - CompatHelper: add new compat entry for DiffEqDevTools at version 2 for package AstroChem, (keep existing compat) (#1093) (@github-actions[bot]) - Bayesian inference (#1096) (@ParamThakkar123) - Remove unsuccessful solvings in linear BVP benchmarks (#1097) (@ErikQQY) - CompatHelper: bump compat for Plots to 1 for package DynamicalODE, (keep existing compat) (#1100) (@github-actions[bot]) - Revert "Bayesian inference" (#1101) (@ChrisRackauckas) - Bump astrochem manifest (#1110) (@ChrisRackauckas) - CompatHelper: bump compat for NonlinearSolve to 4 for package ComplicatedPDE, (keep existing compat) (#1111) (@github-actions[bot]) - CompatHelper: bump compat for NonlinearSolve to 4 for package IntervalNonlinearProblem, (keep existing compat) (#1112) (@github-actions[bot]) - CompatHelper: bump compat for NonlinearSolve to 4 for package NonlinearProblem, (keep existing compat) (#1113) (@github-actions[bot]) - CompatHelper: bump compat for SimpleNonlinearSolve to 2 for package NonlinearProblem, (keep existing compat) (#1114) (@github-actions[bot]) - Testing JumpProcesses - EGFR benchmark (#1115) (@vyudu) - feat: update to nonlinear solve v4 (#1116) (@avik-pal) - bump Jumps to Catalyst v14, MTK v9 (#1118) (@vyudu) - Revert DynamicalODE (#1119) (@ChrisRackauckas) - CompatHelper: add new compat entry for ReactionNetworkImporters at version 0.15 for package Jumps, (keep existing compat) (#1124) (@github-actions[bot]) - Add ionic liquid dehumidifier benchmarks (#1127) (@ErikQQY) - Banded Matrix Metric (#1128) (@anastasia21112) - Just don't show the reaction network parts (#1129) (@ChrisRackauckas) - CompatHelper: bump compat for LazySets to 3 for package HybridJumps, (keep existing compat) (#1130) (@github-actions[bot]) - CompatHelper: add new compat entry for DifferentiationInterface at version 0.6 for package NonlinearProblem, (keep existing compat) (#1131) (@github-actions[bot]) - CompatHelper: add new compat entry for PETSc at version 0.3 for package NonlinearProblem, (keep existing compat) (#1132) (@github-actions[bot]) - CompatHelper: add new compat entry for SparseConnectivityTracer at version 0.6 for package NonlinearProblem, (keep existing compat) (#1133) (@github-actions[bot]) - CompatHelper: add new compat entry for LineSearches at version 7 for package NonlinearProblem, (keep existing compat) (#1134) (@github-actions[bot]) - CompatHelper: add new compat entry for Enzyme at version 0.13 for package NonlinearProblem, (keep existing compat) (#1135) (@github-actions[bot]) - Add new benchmark for sparse AD on simple loop written diffusion operator (#1138) (@yolhan83) - correct parsing of the DF (#1139) (@yolhan83) - CompatHelper: add new compat entry for Mooncake at version 0.4 for package AutomaticDifferentiationSparse, (keep existing compat) (#1140) (@github-actions[bot]) - CompatHelper: add new compat entry for DifferentiationInterfaceTest at version 0.9 for package AutomaticDifferentiationSparse, (keep existing compat) (#1141) (@github-actions[bot]) - CompatHelper: add new compat entry for PrettyTables at version 2 for package AutomaticDifferentiationSparse, (keep existing compat) (#1142) (@github-actions[bot]) - CompatHelper: add new compat entry for Enzyme at version 0.13 for package AutomaticDifferentiationSparse, (keep existing compat) (#1143) (@github-actions[bot]) - DynamicalODE Benchmark Updates (#1145) (@ParamThakkar123) - ComplicatedPDE Benchmark updates (#1146) (@ParamThakkar123) - Update PINNOptimizers Benchmarks (#1148) (@ParamThakkar123) - CompatHelper: bump compat for Zygote to 0.7 for package AutomaticDifferentiation, (keep existing compat) (#1149) (@github-actions[bot]) - CompatHelper: bump compat for Zygote to 0.7 for package AutomaticDifferentiationSparse, (keep existing compat) (#1150) (@github-actions[bot]) - CompatHelper: bump compat for Zygote to 0.7 for package Optimizaton, (keep existing compat) (#1151) (@github-actions[bot]) - CompatHelper: add new compat entry for IJulia at version 1 for package ComplicatedPDE, (keep existing compat) (#1152) (@github-actions[bot]) - CompatHelper: add new compat entry for SciMLBenchmarks at version 0.1 for package ComplicatedPDE, (keep existing compat) (#1153) (@github-actions[bot]) - CompatHelper: bump compat for CairoMakie to 0.13 for package ModelingToolkit, (keep existing compat) (#1154) (@github-actions[bot]) - CompatHelper: bump compat for CairoMakie to 0.13 for package NonStiffBVP, (keep existing compat) (#1155) (@github-actions[bot]) - CompatHelper: bump compat for CairoMakie to 0.13 for package NonlinearProblem, (keep existing compat) (#1156) (@github-actions[bot]) - CompatHelper: bump compat for CairoMakie to 0.13 for package StiffBVP, (keep existing compat) (#1157) (@github-actions[bot]) - PINNErrorVsTime Benchmark Updates (#1159) (@ParamThakkar123) - Updating ParameterEstimation Benchmarks (#1160) (@ParamThakkar123) - CompatHelper: add new compat entry for OptimizationOptimisers at version 0.3 for package PINNOptimizers, (keep existing compat) (#1161) (@github-actions[bot]) - CompatHelper: add new compat entry for StableRNGs at version 1 for package Jumps, (keep existing compat) (#1162) (@github-actions[bot]) - CompatHelper: bump compat for Pardiso to 1 for package LinearSolve, (keep existing compat) (#1165) (@github-actions[bot]) - CompatHelper: add new compat entry for ModelingToolkit at version 9 for package ParameterEstimation, (keep existing compat) (#1166) (@github-actions[bot]) - feat: add benchmark for effect of CSE on jacobian computation/compilation (#1178) (@AayushSabharwal) - fix: NonlinearSolve Benchmarks + PETSc runs (#1181) (@avik-pal) - Bump OrdinaryDiffEq version for Stiff ODE Benchmarks (#1183) (@jClugstor) - CompatHelper: bump compat for AlgebraicMultigrid to 1 for package NonlinearProblem, (keep existing compat) (#1184) (@github-actions[bot]) - CompatHelper: bump compat for AlgebraicMultigrid to 1 for package StiffODE, (keep existing compat) (#1185) (@github-actions[bot]) - CompatHelper: bump compat for ForwardDiff to 1 for package AutomaticDifferentiation, (keep existing compat) (#1186) (@github-actions[bot]) - CompatHelper: bump compat for ForwardDiff to 1 for package AutomaticDifferentiationSparse, (keep existing compat) (#1187) (@github-actions[bot]) - CompatHelper: bump compat for ForwardDiff to 1 for package OptimizationFrameworks, (keep existing compat) (#1188) (@github-actions[bot]) - CompatHelper: bump compat for ForwardDiff to 1 for package Optimizaton, (keep existing compat) (#1189) (@github-actions[bot]) - CompatHelper: bump compat for ForwardDiff to 1 for package ParameterEstimation, (keep existing compat) (#1190) (@github-actions[bot]) - Allow SVG from BVP benchmarks (#1192) (@ErikQQY) - CompatHelper: bump compat for Catalyst to 15 for package AstroChem, (keep existing compat) (#1193) (@github-actions[bot]) - fix: titles of the runs (#1201) (@avik-pal) - CompatHelper: add new compat entry for SparseMatrixColorings at version 0.4 for package NonlinearProblem, (keep existing compat) (#1202) (@github-actions[bot]) - Add benchmarks of `BracketingNonlinearSolve.jl` algorithm suite (#1204) (@fgittins) - CompatHelper: add new compat entry for Cuba at version 2 for package PINNErrorsVsTime, (keep existing compat) (#1216) (@github-actions[bot]) - CompatHelper: add new compat entry for MLDataDevices at version 1 for package PINNErrorsVsTime, (keep existing compat) (#1217) (@github-actions[bot]) - CompatHelper: add new compat entry for ReverseDiff at version 1 for package PINNErrorsVsTime, (keep existing compat) (#1218) (@github-actions[bot]) - CompatHelper: add new compat entry for Optimisers at version 0.4 for package PINNErrorsVsTime, (keep existing compat) (#1219) (@github-actions[bot]) - CompatHelper: add new compat entry for OptimizationOptimisers at version 0.3 for package PINNErrorsVsTime, (keep existing compat) (#1220) (@github-actions[bot]) - CompatHelper: add new compat entry for Optimization at version 4 for package PINNErrorsVsTime, (keep existing compat) (#1221) (@github-actions[bot]) - CompatHelper: add new compat entry for Cubature at version 1 for package PINNErrorsVsTime, (keep existing compat) (#1222) (@github-actions[bot]) - CompatHelper: bump compat for DifferentiationInterfaceTest to 0.10 for package AutomaticDifferentiation, (keep existing compat) (#1224) (@github-actions[bot]) - CompatHelper: bump compat for DifferentiationInterface to 0.7 for package AutomaticDifferentiation, (keep existing compat) (#1225) (@github-actions[bot]) - CompatHelper: bump compat for DifferentiationInterfaceTest to 0.10 for package AutomaticDifferentiationSparse, (keep existing compat) (#1226) (@github-actions[bot]) - CompatHelper: bump compat for DifferentiationInterface to 0.7 for package AutomaticDifferentiationSparse, (keep existing compat) (#1227) (@github-actions[bot]) - CompatHelper: bump compat for DifferentiationInterface to 0.7 for package NonlinearProblem, (keep existing compat) (#1228) (@github-actions[bot]) - CompatHelper: bump compat for Interpolations to 0.16 for package StiffBVP, (keep existing compat) (#1229) (@github-actions[bot]) - Benchmarking Variable Rate Aggregator (#1230) (@sivasathyaseeelan) - Add Global Optimization from BlackBoxOptimizationBenchmarking.jl (#1231) (@ChrisRackauckas) - CompatHelper: bump compat for ModelingToolkit to 10 for package ComplicatedPDE, (keep existing compat) (#1233) (@github-actions[bot]) - CompatHelper: add new compat entry for OptimizationNLopt at version 0.3 for package GlobalOptimization, (keep existing compat) (#1235) (@github-actions[bot]) - CompatHelper: add new compat entry for OptimizationNOMAD at version 0.3 for package GlobalOptimization, (keep existing compat) (#1236) (@github-actions[bot]) - CompatHelper: add new compat entry for OptimizationMetaheuristics at version 0.3 for package GlobalOptimization, (keep existing compat) (#1237) (@github-actions[bot]) - CompatHelper: add new compat entry for Memoize at version 0.4 for package GlobalOptimization, (keep existing compat) (#1238) (@github-actions[bot]) - CompatHelper: add new compat entry for OptimizationBBO at version 0.4 for package GlobalOptimization, (keep existing compat) (#1239) (@github-actions[bot]) - CompatHelper: add new compat entry for OptimizationPRIMA at version 0.3 for package GlobalOptimization, (keep existing compat) (#1240) (@github-actions[bot]) - CompatHelper: add new compat entry for OptimizationOptimisers at version 0.3 for package GlobalOptimization, (keep existing compat) (#1241) (@github-actions[bot]) - CompatHelper: add new compat entry for OptimizationOptimJL at version 0.4 for package GlobalOptimization, (keep existing compat) (#1242) (@github-actions[bot]) - CompatHelper: add new compat entry for OptimizationEvolutionary at version 0.4 for package GlobalOptimization, (keep existing compat) (#1243) (@github-actions[bot]) - CompatHelper: add new compat entry for Optimization at version 4 for package GlobalOptimization, (keep existing compat) (#1244) (@github-actions[bot]) - CompatHelper: bump compat for ModelingToolkit to 10 for package MethodOfLinesPDE, (keep existing compat) (#1246) (@github-actions[bot]) - CompatHelper: bump compat for ModelingToolkit to 10 for package PINNErrorsVsTime, (keep existing compat) (#1250) (@github-actions[bot]) - CompatHelper: bump compat for ModelingToolkit to 10 for package PINNOptimizers, (keep existing compat) (#1251) (@github-actions[bot]) - CompatHelper: bump compat for ModelingToolkit to 10 for package SimpleHandwrittenPDE, (keep existing compat) (#1253) (@github-actions[bot]) - ci: sign treehashes (#1255) (@thazhemadam) - Bump HybirdJumps (#1256) (@ChrisRackauckas) - Bump Optimization (#1257) (@ChrisRackauckas) - Bump automatic differentiation tests (#1258) (@ChrisRackauckas) - Bump jumps tests (#1259) (@ChrisRackauckas) - Bump Bayesian (#1261) (@ChrisRackauckas) - Bump dynamicalode (#1262) (@ChrisRackauckas) - Bump AutomaticDifferentiationSparse (#1264) (@ChrisRackauckas) - CompatHelper: bump compat for CairoMakie to 0.14 for package ModelingToolkit, (keep existing compat) (#1271) (@github-actions[bot]) - CompatHelper: bump compat for CairoMakie to 0.14 for package NonStiffBVP, (keep existing compat) (#1272) (@github-actions[bot]) - CompatHelper: bump compat for CairoMakie to 0.14 for package NonlinearProblem, (keep existing compat) (#1273) (@github-actions[bot]) - Fix typo in BrussScaling.jmd (#1276) (@mrarat) - CompatHelper: bump compat for CairoMakie to 0.15 for package ModelingToolkit, (keep existing compat) (#1277) (@github-actions[bot]) - CompatHelper: bump compat for CairoMakie to 0.15 for package NonStiffBVP, (keep existing compat) (#1278) (@github-actions[bot]) - CompatHelper: bump compat for CairoMakie to 0.15 for package NonlinearProblem, (keep existing compat) (#1279) (@github-actions[bot]) - CompatHelper: bump compat for CairoMakie to 0.15 for package StiffBVP, (keep existing compat) (#1280) (@github-actions[bot]) - Updating Benchmark Sets (#1281) (@AdityaPandeyCN) - Add new stiff ODE benchmark problems (#1282) (@ChrisRackauckas) - Add Mosquito state-dependent delay equation benchmark (#1285) (@ChrisRackauckas) - Add Microkinetic model benchmark (#1287) (@ChrisRackauckas) - Add linear DAE benchmarks (#1288) (@ChrisRackauckas) - Extend interval rootfinding benchmark suite (#1290) (@ChrisRackauckas) - Resolving Issue: Errors in Simple Handwritten PDEs as ODEs (#1291) (@GodotMisogi) - CompatHelper: bump compat for SimpleNonlinearSolve to 2 for package IntervalNonlinearProblem, (keep existing compat) (#1292) (@github-actions[bot]) - CompatHelper: add new compat entry for Statistics at version 1 for package IntervalNonlinearProblem, (keep existing compat) (#1293) (@github-actions[bot]) - CompatHelper: add new compat entry for StaticArrays at version 1 for package NonStiffDDE, (keep existing compat) (#1294) (@github-actions[bot]) - CompatHelper: add new compat entry for LabelledArrays at version 1 for package NonStiffDDE, (keep existing compat) (#1295) (@github-actions[bot]) - CompatHelper: add new compat entry for StaticArrays at version 1 for package DAE, (keep existing compat) (#1298) (@github-actions[bot]) - CompatHelper: add new compat entry for Statistics at version 1 for package DAE, (keep existing compat) (#1299) (@github-actions[bot]) - Add attribution (#1300) (@ChrisRackauckas) - CompatHelper: bump compat for SparseConnectivityTracer to 1 for package AutomaticDifferentiationSparse, (keep existing compat) (#1301) (@github-actions[bot]) - CompatHelper: bump compat for SparseConnectivityTracer to 1 for package NonlinearProblem, (keep existing compat) (#1302) (@github-actions[bot]) - added nand gate problem benchmark (#1303) (@jayantpranjal0) - Update simpleintervalrootfind.jmd (#1304) (@jverzani) - Apply JuliaFormatter to fix code formatting (#1307) (@ChrisRackauckas) - Complete NAND Gate DAE benchmark with multiple formulations and comprehensive solver testing (#1308) (@ChrisRackauckas) - CompatHelper: consolidate version bumps for multiple packages (#1316) (@ChrisRackauckas) - Fixed KenCarp methods in KdV and KS FDM benchmarks (#1317) (@GodotMisogi) - ci: re-sign treehashes (#1318) (@thazhemadam) - CompatHelper: bump compat for SDEProblemLibrary to 1 for package AdaptiveSDE, (keep existing compat) (#1319) (@github-actions[bot]) - CompatHelper: bump compat for SDEProblemLibrary to 1 for package NonStiffSDE, (keep existing compat) (#1320) (@github-actions[bot]) - CompatHelper: bump compat for SDEProblemLibrary to 1 for package StiffSDE, (keep existing compat) (#1321) (@github-actions[bot]) - Improve CUTEst benchmarks (#1323) (@ChrisRackauckas) - Add compat entries for all CUTEst benchmark dependencies (#1340) (@ChrisRackauckas-Claude) - Update Turing.jl to v0.39 for BayesianInference benchmarks (#1342) (@ChrisRackauckas-Claude) - CompatHelper: bump compat for LazySets to 5 for package HybridJumps, (keep existing compat) (#1345) (@github-actions[bot]) - CompatHelper: bump compat for JLD2 to 0.6 for package Bio, (keep existing compat) (#1346) (@github-actions[bot]) - Add Enright-Pryce benchmarks to NonStiffODE (#1352) (@ChrisRackauckas-Claude) - Add SIMD RK methods to NonStiffODE benchmarks (#1353) (@ChrisRackauckas-Claude) - Simple Handwritten PDEs: Benchmarks with preconditioners for Krylov subspace methods + minor typo fixes (#1354) (@GodotMisogi) - CompatHelper: add new compat entry for AlgebraicMultigrid at version 1 for package SimpleHandwrittenPDE, (keep existing compat) (#1356) (@github-actions[bot]) - CompatHelper: add new compat entry for IncompleteLU at version 0.2 for package SimpleHandwrittenPDE, (keep existing compat) (#1357) (@github-actions[bot]) - CompatHelper: add new compat entry for Preconditioners at version 0.6 for package SimpleHandwrittenPDE, (keep existing compat) (#1358) (@github-actions[bot]) - Fix ND problems stack overflow in Enright-Pryce benchmarks (#1359) (@ChrisRackauckas-Claude) - CompatHelper: add new compat entry for OrdinaryDiffEqSIMDRK at version 1 for package NonStiffODE, (keep existing compat) (#1360) (@github-actions[bot]) - Update NonStiffODE benchmarks for ModelingToolkit v10 compatibility (#1361) (@ChrisRackauckas-Claude) - Fix ModelingToolkit v10 ODESystem constructor compatibility in NonStiffODE benchmarks (#1363) (@ChrisRackauckas-Claude) - Consolidate all Symbolics package compat entries (#1381) (@ChrisRackauckas-Claude) - docs: add `benchmarks/Symbolics` to doc pages (#1382) (@AayushSabharwal) - Add IRKGaussLegendre.jl methods to Non-stiff ODE benchmarks (#1384) (@ChrisRackauckas-Claude) - CompatHelper: add new compat entry for IRKGaussLegendre at version 0.2 for package NonStiffODE, (keep existing compat) (#1385) (@github-actions[bot]) - CompatHelper: add new compat entry for LinearSolve at version 3 for package HybridJumps, (keep existing compat) (#1387) (@github-actions[bot]) - CompatHelper: add new compat entry for StableRNGs at version 1 for package HybridJumps, (keep existing compat) (#1388) (@github-actions[bot]) - CompatHelper: add new compat entry for Graphs at version 1 for package HybridJumps, (keep existing compat) (#1389) (@github-actions[bot]) - CompatHelper: add new compat entry for StochasticDiffEq at version 6 for package HybridJumps, (keep existing compat) (#1390) (@github-actions[bot]) - CompatHelper: add new compat entry for DiffEqBase at version 6 for package HybridJumps, (keep existing compat) (#1391) (@github-actions[bot]) - CompatHelper: bump compat for Sundials to 5 for package AstroChem, (keep existing compat) (#1392) (@github-actions[bot]) - CompatHelper: bump compat for Sundials to 5 for package Bio, (keep existing compat) (#1393) (@github-actions[bot]) - CompatHelper: bump compat for Sundials to 5 for package ComplicatedPDE, (keep existing compat) (#1394) (@github-actions[bot]) - CompatHelper: bump compat for Sundials to 5 for package Jumps, (keep existing compat) (#1396) (@github-actions[bot]) - CompatHelper: bump compat for Sundials to 5 for package NonStiffODE, (keep existing compat) (#1398) (@github-actions[bot]) - CompatHelper: bump compat for Sundials to 5 for package NonlinearProblem, (keep existing compat) (#1399) (@github-actions[bot]) - CompatHelper: bump compat for Sundials to 5 for package StiffODE, (keep existing compat) (#1401) (@github-actions[bot]) - fix: fix `Symbolics` benchmark group manifest (#1403) (@AayushSabharwal) - CompatHelper: add new compat entry for CairoMakie at version 0.15 for package Symbolics, (keep existing compat) (#1404) (@github-actions[bot]) - CompatHelper: add new compat entry for DataStructures at version 0.19 for package Symbolics, (keep existing compat) (#1405) (@github-actions[bot]) - CompatHelper: bump compat for SymbolicUtils to 4 for package Symbolics, (keep existing compat) (#1406) (@github-actions[bot]) - chore: fix Symbolics benchmark compat entries (#1407) (@AayushSabharwal) - CompatHelper: bump compat for CairoMakie to 0.15 for package Symbolics, (keep existing compat) (#1408) (@github-actions[bot]) - CompatHelper: bump compat for DataStructures to 0.19 for package Symbolics, (keep existing compat) (#1409) (@github-actions[bot]) - CompatHelper: bump compat for Optimization to 5 for package PINNErrorsVsTime, (keep existing compat) (#1417) (@github-actions[bot]) - CompatHelper: bump compat for Optimization to 5 for package PINNOptimizers, (keep existing compat) (#1418) (@github-actions[bot]) - CompatHelper: bump compat for Optimization to 5 for package ParameterEstimation, (keep existing compat) (#1419) (@github-actions[bot]) - build(deps): bump actions/checkout from 4 to 6 (#1433) (@dependabot[bot]) - Add Julia ecosystem to Dependabot configuration (#1434) (@ChrisRackauckas-Claude) - build(deps): update Documenter requirement to 1.16.1 in /docs in the all-julia-packages group across 1 directory (#1435) (@dependabot[bot]) - Add PrecompileTools workload to improve TTFX (#1436) (@ChrisRackauckas-Claude) - Fix typo in benchmark filename: Dissusion -> Diffusion (#1437) (@ChrisRackauckas-Claude) - Add explicit imports and ExplicitImports.jl CI tests (#1438) (@ChrisRackauckas-Claude) - Documentation improvements: Fix typos and grammar issues (#1439) (@ChrisRackauckas-Claude) - Fix typo in RCCircuit benchmark (#1441) (@ChrisRackauckas-Claude) - Documentation improvements: Fix typos, grammar, and outdated references (#1446) (@ChrisRackauckas-Claude) - Fix typos and variable name errors in benchmarks (#1447) (@ChrisRackauckas-Claude) - Fix: syntax errors and undefined references in CUTEst benchmarks (#1448) (@AJ0070) - make high oscillation function bracketed, add ModAB to tests (#1451) (@oscardssmith) - Move IJulia to weak dependency with extension (#1452) (@ChrisRackauckas-Claude) - Fix precompile ordering in weave_file (#1454) (@ChrisRackauckas-Claude) - Add MooncakeVJP to BrussScaling benchmark (#1456) (@ChrisRackauckas-Claude) - Add BrussScalingMemory: peak memory benchmarks via subprocesses (#1457) (@ChrisRackauckas-Claude) - Bump DAE benchmarks Manifest.toml (#1458) (@ChrisRackauckas-Claude) - Add Simeon 1998 slider-crank benchmark (Index-2 DAE) (#1459) (@singhharsh1708) - Add Two-Bit Adding Unit DAE benchmark (IVP Test Set, 350-variable ind… (#1461) (@singhharsh1708) - Fix docs page ordering when benchmark folders are added (#1462) (@ChrisRackauckas-Claude) - Rebase autodiff updates and regenerate Julia 1.10 manifest (#1463) (@ChrisRackauckas-Claude) - NonStiffODE: latest-major compat updates + Julia 1.10 manifest regen (#1464) (@ChrisRackauckas-Claude) - StiffODE: latest-major compat updates + Julia 1.10 manifest regen (#1465) (@ChrisRackauckas-Claude) - DAE: latest-major compat updates + Julia 1.10 manifest regen (#1466) (@ChrisRackauckas-Claude) - SimpleHandwrittenPDE: latest compat bumps + remove Preconditioners (#1467) (@ChrisRackauckas-Claude) - BayesianInference: bump Turing compat and regen Julia 1.10 manifest (#1468) (@ChrisRackauckas-Claude) - Bump compats and regenerate manifests for NonlinearProblem and AstroChem (#1469) (@ChrisRackauckas-Claude) - ComplicatedPDE: latest-major compat updates + Julia 1.10 manifest regen (#1470) (@ChrisRackauckas-Claude) - Bump AutomaticDifferentiationSparse to Symbolics v7 and latest majors (#1471) (@ChrisRackauckas-Claude) - Bump AD benchmark compat: PrettyTables 3, DIT 0.11, Symbolics 7, Mooncake 0.5 (#1472) (@ChrisRackauckas-Claude) - Bump Surrogates benchmarks to PrettyTables v3, Surrogates v7 (#1473) (@ChrisRackauckas-Claude) - Bump AD benchmark compats: PrettyTables v3, DI 0.7, DIT 0.11, Symbolics v7 (#1476) (@ChrisRackauckas-Claude) - Bump MethodOfLinesPDE to MTK v11, MOL v0.11, Sundials v5 (#1477) (@ChrisRackauckas-Claude) - Fix broken AD benchmarks and remove IRKGL16 from RigidBody (#1478) (@ChrisRackauckas-Claude) - Bump DynamicalODE: TaylorIntegration 0.18 + ExplicitTaylor benchmarks (#1479) (@ChrisRackauckas-Claude) - Add Fekete DAE benchmark (mass-matrix + residual DAE formulations) (#1480) (@singhharsh1708) - Add Water Tube System DAE Benchmark (IVP Test Set, 49D, Index-2) (#1481) (@singhharsh1708) - Add wall-clock time success charts to global optimization benchmarks (#1482) (@ChrisRackauckas-Claude) - Add Charge Pump (index-2 DAE) benchmark with MTK, MM, and residual forms (#1483) (@singhharsh1708) - Add Car Axis index-3 DAE benchmark (#1484) (@singhharsh1708) - Add Andrews squeezing mechanism benchmark with MM, DAE, and MTK formu… (#1485) (@singhharsh1708) - Add Wheelset DAE benchmark with residual, mass-matrix, and MTK formul… (#1486) (@singhharsh1708) - Fix unused footnote [^2] in EGFR_Benchmark (#1487) (@ChrisRackauckas-Claude) - Add warnonly and disable size_threshold in docs/make.jl (#1488) (@ChrisRackauckas-Claude) - Fix Bayesian benchmarks: add ESS/s, consistent posteriors and timing (#1489) (@ChrisRackauckas-Claude) - Bump Optimization to v5 and add colorblind-friendly plot markers (#1490) (@ChrisRackauckas-Claude) - Fix NBodySimulator liquid argon benchmarks: missing appendix (#1491) (@ChrisRackauckas-Claude) - Add heating system work-precision benchmark (#1492) (@ChrisRackauckas-Claude) - Add 4 stiff ODE benchmarks from IVP Test Set (#1493) (@ChrisRackauckas-Claude) - Add NLS PDE benchmark to SimpleHandwrittenPDE section (#1494) (@ChrisRackauckas-Claude) - Fix test failure: update Testing Manifest.toml for PrecompileTools (#1497) (@ChrisRackauckas-Claude) - Fix PolyesterThreads in StiffODE benchmarks (#1498) (@ChrisRackauckas-Claude) - Migrate benchmark CI from Buildkite to GitHub Actions (#1501) (@ChrisRackauckas-Claude) - Fix benchmark detection script and test GHA CI (#1502) (@ChrisRackauckas-Claude) - Test GHA CI: Manifest.toml coalescing triggers full directory rebuild (#1504) (@ChrisRackauckas-Claude) - Fix publish job being skipped on master pushes (#1505) (@ChrisRackauckas-Claude) - Test GHA publish pipeline end-to-end (#1506) (@ChrisRackauckas-Claude) - Upgrade CmdStan 2.29.2 → 2.38.0 for BayesianInference benchmarks (#1507) (@ChrisRackauckas-Claude) - Add per-benchmark runner configuration for GPU vs CPU routing (#1508) (@ChrisRackauckas-Claude) - Add per-benchmark setup.sh scripts, remove hardcoded CI hacks (#1509) (@ChrisRackauckas-Claude) - Use Julia version from Manifest.toml per benchmark (#1510) (@ChrisRackauckas-Claude) - Wrap error-demonstration sections in try/catch for clean builds (#1511) (@ChrisRackauckas-Claude) - Set error=false chunk default to fail builds on uncaught errors (#1512) (@ChrisRackauckas-Claude) - Add Parallel Particle Swarm Optimizer Benchmarks (#1513) (@AdityaPandeyCN) - DAE: latest-major compat + MTK v11 fixes + Julia 1.10 manifest (#1514) (@ChrisRackauckas-Claude) - Fix broken URLs in README and docs (#1516) (@ChrisRackauckas-Claude) - Bump actions/upload-artifact from 4 to 7 (#1518) (@dependabot[bot]) - Bump actions/download-artifact from 4 to 8 (#1519) (@dependabot[bot]) - Bump actions/checkout from 4 to 6 (#1520) (@dependabot[bot]) - Bump julia-actions/cache from 2 to 3 (#1521) (@dependabot[bot]) - Skip MOLxPDESystemLibrary systems with parameters (MethodOfLines.jl#537) (#1522) (@ChrisRackauckas-Claude) - Add ParU benchmarks (rebased, Julia 1.12 manifest) (#1523) (@ChrisRackauckas-Claude) - Update Symbolics benchmarks for Symbolics v7 + SymbolicUtils v4 (#1524) (@ChrisRackauckas-Claude) - Drop JuliaSimCompiler, update ModelingToolkit benchmarks for MTK v11 (#1525) (@ChrisRackauckas-Claude) - Bump CairoMakie compat to include 0.14 for StiffBVP (#1526) (@ChrisRackauckas-Claude) - Fix Dependabot config to cover all benchmark subdirectories (#1527) (@ChrisRackauckas-Claude) - Add nonlinear BVP benchmarks (rebase of #1203) (#1528) (@ChrisRackauckas-Claude) - Add high-order weak SDE benchmarks (#1529) (@ChrisRackauckas-Claude) - Complete neural network benchmarks with Reactant, JAX, and PyTorch (#1530) (@ChrisRackauckas-Claude) - Update OptimizationFrameworks: compat, MTK bounds fix, Manifest refresh (#1531) (@ChrisRackauckas-Claude) - Add stiff DDE benchmark suite from RADAR5 test problems (#1532) (@ChrisRackauckas-Claude) - Fix StiffODE: add missing OrdinaryDiffEqCore import (#1533) (@ChrisRackauckas-Claude) - Fix NonStiffODE benchmark errors (#1534) (@ChrisRackauckas-Claude) - Fix NonlinearProblem PrettyTables backend for v3 (#1535) (@ChrisRackauckas-Claude) - Fix AstroChem StackOverflowError in reference solution (#1536) (@ChrisRackauckas-Claude) - Fix ParameterEstimation Lorenz benchmark errors (#1537) (@ChrisRackauckas-Claude) - Fix StiffSDE: regenerate Manifest and fix repmat (#1538) (@ChrisRackauckas-Claude) - Fix NonStiffBVP orbital: add dt to MIRK solvers (#1539) (@ChrisRackauckas-Claude) - Add missing NonStiffSDE Manifest.toml (#1540) (@ChrisRackauckas-Claude) - Fix IntervalNonlinearProblem: Ridders → Ridder (#1541) (@ChrisRackauckas-Claude) - Regenerate StiffDDE Manifest.toml for Julia 1.10 (#1543) (@ChrisRackauckas-Claude) - Fix HybridJumps: add Python deps and fix Synapse BoundsError (#1544) (@ChrisRackauckas-Claude) - Fix DAE/TransistorAmplifier: remove incompatible solvers (#1545) (@ChrisRackauckas-Claude) - Retrigger CI for benchmarks whose builds were cancelled (#1546) (@ChrisRackauckas-Claude) - Make benchmark change detection cumulative on master pushes (#1547) (@ChrisRackauckas-Claude) - Fix RingModulator: use permutedims for Vector{String} title (#1548) (@ChrisRackauckas-Claude) - Bump julia-actions/setup-julia from 2 to 3 (#1549) (@dependabot[bot]) - filament test update (#1550) (@MoisaAndrew) - Update benchmarks to OrdinaryDiffEq v7 / SciMLBase v3 / RecursiveArrayTools v4 stack (#1551) (@ChrisRackauckas-Claude) - Publish partial successes instead of all-or-nothing (#1556) (@ChrisRackauckas-Claude) - Bump Weekly Update workflow to Julia 1.10 (#1557) (@ChrisRackauckas-Claude) - Retrigger v7 outputs for 5 cancelled folders (batch 1) (#1558) (@ChrisRackauckas-Claude) - Fix detect-changes failing on unauth API rate limit (#1562) (@ChrisRackauckas-Claude) **Closed issues:** - Benchmarks for stiff DDEs (#6) - Benchmark Tim Holy's global algorithms on parameter estimation problems (#34) - Non-diagonal and commutative SDE benchmarks (#17) - Add CMA packages to parameter estimation benchmarks (#24) - A bunch of tumor models (#56) - Add heating system benchmark (#90) - Convert reaction diffusion problem into a benchmark (#91) - State-dependent delay differential equation benchmark (#163) - Add MKM stiff ODE Benchmark (#179) - Fix NBodySimulator Benchmarks (#271) - Documentation for getting started (#285) - Benchmarking with Gillespy2 (#309) - More stiff ODE benchmarks (#358) - More DAE benchmarks (#359) - Linear DAE Benchmark Problems (#360) - High-Order Weak SDE Benchmarks (#393) - Bigger non-stiff PDE benchmark (#397) - No ESS/s reported for the Bayesian parameter estimation benchmarks (#494) - Summary of issues with ODE Bayesian parameter estimation benchmarks (#496) - reproduciblity liquid argon (#561) - Benchmarks for nonlinear solvers (#570) - Images (#634) - Get BlackBoxOptimizationBenchmarking.jl updated to Optimization.jl's interface and run on SciMLBenchmarks (#640) - AC Optimal Power Flow Benchmark (#669) - Fix up Synapse benchmark (#692) - OCI Container with all of the packages needed to run SciMLBenchmarks.jl fails (#743) - The "Single Pedulum Comparison" benchmark is broken (#785) - Multivariate Hawkes SSA benchmark broken (#825) - Upgrade to julia 1.10 (#830) - Package "LabelledArrays" produces error on installation (#891) - Errors in the Pseudospectral benchmarks (#929) - Total time benchmark excludes `f!` compile time in Thermal fluid benchmark (#972) - RC circuit benchmarks broken (#1034) - Nonlinear BVP benchmark (#1123) - Error: UndefVarError: `solver_tracker` not defined (#1180) - Errors in Simple Handwritten PDEs as ODEs (#1284) - Better charts in BlackboxGlobalOptimization.jl benchmark (#1402)
## SciMLBenchmarks v0.1.2 [Diff since v0.1.1](v0.1.1...v0.1.2) **Closed issues:** - PDE notebooks need to be rerun or re-linked (#53) - No recompilation of Stan models in Bayesian benchmarks (#103) - Make a Brusselator benchmark (#107) - Re-run parameter estimation benchmarks (#129) - Fix automated notebooks (#310) - PINN solver benchmarks are broken (#353) - Dynamical ODE benchmark HTML is too big (#455) - Errors in precompilation (#469) - Fixing the Stan binary for the Bayesian estimation (#484) - Ensure Stan defaults used in benchmarks (#489) - Stan and Turing.jl don't use the same HMC parameters (#492) - Stan and Turing.jl don't sample from the same posteriors for the Bayesian parameter estimation benchmarks (#493) - Newly added Gupta (bio) benchmarks links not working in the Readme (#498) **Merged pull requests:** - update parameter_estimation (#362) (@ChrisRackauckas) - Jump benchmarks (#408) (@isaacsas) - Add MethodOfLines Benchmark (#425) (@xtalax) - bump nbody (#450) (@ChrisRackauckas) - bump adaptive sde (#451) (@ChrisRackauckas) - Use default names for algorithms in DDE benchmarks (#468) (@devmotion) - bump DynamicalODE (#470) (@ChrisRackauckas) - bump non-stiff SDE (#471) (@ChrisRackauckas) - change sigmoid to tanh in PINNs' benchmarks (#473) (@YichengDWu) - Bump Lotka-Volterra SDE (#474) (@ChrisRackauckas) - CompatHelper: add new compat entry for StanSample at version 6 for package BayesianInference, (keep existing compat) (#476) (@github-actions[bot]) - CompatHelper: add new compat entry for DiffEqCallbacks at version 2 for package BayesianInference, (keep existing compat) (#477) (@github-actions[bot]) - CompatHelper: add new compat entry for Turing at version 0.21 for package BayesianInference, (keep existing compat) (#478) (@github-actions[bot]) - Attempt another Bayesian inference build (#485) (@ChrisRackauckas) - Fix PDE definition for Nernst-Planck (#486) (@ChrisRackauckas) - Add Gupta model benchmarks (#487) (@TorkelE) - badges (#488) (@ArnoStrouwen) - MassInstallAction: Install the Invalidations workflow on this repository (#490) (@devmotion) - Add extrapolation benchmarks to new bio models (#491) (@utkarsh530) - Try using a static direct Turing.jl version (#495) (@ChrisRackauckas) - change adapt_delta to fit with Turing.jl (#497) (@EvoArt) - bump a few packages (#499) (@ChrisRackauckas) - Fix the Stan delta choice to match Turing (#500) (@ChrisRackauckas) - CompatHelper: add new compat entry for StaticArrays at version 1 for package BayesianInference, (keep existing compat) (#501) (@github-actions[bot]) - Update gupta benchmarks (#502) (@TorkelE) - update to v1.8 and update Bio to have nonstiff stuff (#504) (@ChrisRackauckas) - Update stiff ODE benchmarks for Rodas5P and specializations (#505) (@ChrisRackauckas) - update non-stiff ODEs to have static arrays and full specialization (#506) (@ChrisRackauckas) - CompatHelper: add new compat entry for StaticArrays at version 1 for package NonStiffODE, (keep existing compat) (#507) (@github-actions[bot]) - Fix up Brusselator benchmark (#508) (@ChrisRackauckas) - Create static versions of the problems for small stiff (#509) (@ChrisRackauckas) - simplify static stiff (#510) (@ChrisRackauckas) - Expand bruss benchmarks (#511) (@ChrisRackauckas) - CompatHelper: add new compat entry for AlgebraicMultigrid at version 0.5 for package StiffODE, (keep existing compat) (#512) (@github-actions[bot]) - CompatHelper: add new compat entry for Symbolics at version 4 for package StiffODE, (keep existing compat) (#513) (@github-actions[bot]) - CompatHelper: add new compat entry for IncompleteLU at version 0.2 for package StiffODE, (keep existing compat) (#514) (@github-actions[bot]) - CompatHelper: add new compat entry for ModelingToolkit at version 8 for package StiffODE, (keep existing compat) (#515) (@github-actions[bot]) - Update problem library for StiffSDE (#516) (@ChrisRackauckas) - update stiff dde (#517) (@ChrisRackauckas) - update nonstiff sde (#518) (@ChrisRackauckas) - update nonstiff dde (#519) (@ChrisRackauckas) - update to jump problem library (#520) (@ChrisRackauckas) - bump pde (#521) (@ChrisRackauckas) - add fast bruss implemenation (#522) (@ChrisRackauckas) - bump multisite and multistate (#523) (@ChrisRackauckas) - Bump fceri (#524) (@ChrisRackauckas) - CompatHelper: add new compat entry for LinearSolve at version 1 for package Bio, (keep existing compat) (#525) (@github-actions[bot]) - Adjust some of the new bio benchmarks to stop around steady state time (#526) (@ChrisRackauckas) - Update Bio WP diagrams (#527) (@TorkelE) - .buildkite: run_benchmark: use `v1` of `coppermind` plugin (#529) (@thazhemadam) - Try new Bio build (#533) (@ChrisRackauckas) - Fix typo in BCR (#534) (@ChrisRackauckas) - full specialize in Bidkhori2012 (#535) (@ChrisRackauckas) - remove extrapolation from sparse (#536) (@ChrisRackauckas) - Fix preconditioner definitions (#537) (@ChrisRackauckas) - Bump DynamicalODE (#539) (@ChrisRackauckas) - Bump Bayes (#540) (@ChrisRackauckas) - MOL move to analytic errors for burgers (#541) (@xtalax) - CompatHelper: add new compat entry for MethodOfLines at version 0.7 for package MOLPDE, (keep existing compat) (#542) (@github-actions[bot]) - CompatHelper: add new compat entry for ModelingToolkit at version 8 for package MOLPDE, (keep existing compat) (#543) (@github-actions[bot]) - CompatHelper: add new compat entry for DomainSets at version 0.6 for package MOLPDE, (keep existing compat) (#544) (@github-actions[bot]) - CompatHelper: add new compat entry for Sundials at version 4 for package MethodOfLinesPDE, (keep existing compat) (#545) (@github-actions[bot]) - CompatHelper: add new compat entry for OrdinaryDiffEq at version 6 for package MethodOfLinesPDE, (keep existing compat) (#546) (@github-actions[bot]) - CompatHelper: add new compat entry for LinearSolve at version 1 for package MethodOfLinesPDE, (keep existing compat) (#547) (@github-actions[bot]) - CompatHelper: add new compat entry for MethodOfLines at version 0.7 for package StiffODE, (keep existing compat) (#553) (@github-actions[bot]) - CompatHelper: add new compat entry for DomainSets at version 0.6 for package StiffODE, (keep existing compat) (#554) (@github-actions[bot]) - Bump stiff Bio models (#558) (@ChrisRackauckas) - Update buildkite tags and re-sign treehashes (#559) (@thazhemadam) - Adds Coevolve aggregator to the Jumps benchmark suite (#565) (@gzagatti) - ci: fix encrypted `repo_key` and sign treehashes (#568) (@thazhemadam) - Disable test checking for .html (#569) (@ChrisRackauckas) - Fullspecialize on the Bio benchmarks (#572) (@ChrisRackauckas) - update burgers mol package versions (should be working now) (#574) (@xtalax) - add BCR benchmark summary figure (#577) (@TorkelE) - improve Bio benchmarks (#581) (@TorkelE) - Automatic benchmarking of various MOL discretizations across all of PDESystemLibrary (#583) (@xtalax) - Adds Multivariate Hawkes benchmark. (#584) (@gzagatti) - MultivariateHawkes: Do not run Python benchmark in the cloud (#585) (@gzagatti) - enable dependabot for GitHub actions (#591) (@ranocha) - Bump actions/checkout from 2 to 3 (#592) (@dependabot[bot]) - CompatHelper: bump compat for LinearSolve to 2 for package Bio, (keep existing compat) (#600) (@github-actions[bot]) - CompatHelper: bump compat for LinearSolve to 2 for package MethodOfLinesPDE, (keep existing compat) (#601) (@github-actions[bot]) - CompatHelper: bump compat for LinearSolve to 2 for package StiffODE, (keep existing compat) (#602) (@github-actions[bot])
## SciMLBenchmarks v0.1.1 [Diff since v0.1.0](v0.1.0...v0.1.1) **Closed issues:** - Interesting benchmark problems (#35) - Missing BCR (1122) benchmark page (#185) - Fix DynamicalODE Benchmarks (#261) - Fix Jumps Benchmarks (#262) - Fix VanDerPol and ROBER notebooks (#325) - Scale which benchmarking has been done? (#399) - Jump process benchmarks are old (#456) **Merged pull requests:** - update DynamicalODE benchmarks (#229) (@ChrisRackauckas) - update Jumps benchmarks (#230) (@ChrisRackauckas) - fix liquid argon (#245) (@ChrisRackauckas) - bump parameter estimation benchmarks (#246) (@ChrisRackauckas) - bump non-stiff SDE benchmarks (#247) (@ChrisRackauckas) - Update BCR.jmd (#249) (@ChrisRackauckas) - CompatHelper: add new compat entry for "SciMLBenchmarks" at version "0.1" for package Bio (#251) (@github-actions[bot]) - CompatHelper: add new compat entry for "SciMLBenchmarks" at version "0.1" for package NBodySimulator (#252) (@github-actions[bot]) - CompatHelper: add new compat entry for "SciMLBenchmarks" at version "0.1" for package NonStiffDDE (#253) (@github-actions[bot]) - CompatHelper: add new compat entry for "SciMLBenchmarks" at version "0.1" for package NonStiffODE (#254) (@github-actions[bot]) - CompatHelper: add new compat entry for "SciMLBenchmarks" at version "0.1" for package NonStiffSDE (#255) (@github-actions[bot]) - CompatHelper: add new compat entry for "SciMLBenchmarks" at version "0.1" for package ParameterEstimation (#256) (@github-actions[bot]) - CompatHelper: add new compat entry for "SciMLBenchmarks" at version "0.1" for package StiffDDE (#257) (@github-actions[bot]) - CompatHelper: add new compat entry for "SciMLBenchmarks" at version "0.1" for package StiffODE (#258) (@github-actions[bot]) - CompatHelper: add new compat entry for "SciMLBenchmarks" at version "0.1" for package StiffSDE (#259) (@github-actions[bot]) - CompatHelper: add new compat entry for "SciMLBenchmarks" at version "0.1" for package Testing (#260) (@github-actions[bot]) - CompatHelper: add new compat entry for "SciMLBenchmarks" at version "0.1" for package AdaptiveSDE (#263) (@github-actions[bot]) - CompatHelper: add new compat entry for "SciMLBenchmarks" at version "0.1" for package DynamicalODE (#264) (@github-actions[bot]) - CompatHelper: add new compat entry for "SciMLBenchmarks" at version "0.1" for package AdaptiveSDE (#265) (@github-actions[bot]) - CompatHelper: add new compat entry for "SciMLBenchmarks" at version "0.1" for package Jumps (#266) (@github-actions[bot]) - CompatHelper: add new compat entry for "SciMLBenchmarks" at version "0.1" for package DynamicalODE (#267) (@github-actions[bot]) - CompatHelper: add new compat entry for "SciMLBenchmarks" at version "0.1" for package MOLPDE (#268) (@github-actions[bot]) - CompatHelper: add new compat entry for "SciMLBenchmarks" at version "0.1" for package Jumps (#269) (@github-actions[bot]) - CompatHelper: add new compat entry for "SciMLBenchmarks" at version "0.1" for package MultiLanguage (#270) (@github-actions[bot]) - CompatHelper: bump compat for "BlackBoxOptim" to "0.6" for package ParameterEstimation (#272) (@github-actions[bot]) - CompatHelper: bump compat for "BlackBoxOptim" to "0.6" for package ParameterEstimation (#273) (@github-actions[bot]) - update Jump benchmarks to use Catalyst.jl (#275) (@ChrisRackauckas) - CompatHelper: bump compat for "BenchmarkTools" to "1.0" for package NBodySimulator (#276) (@github-actions[bot]) - CompatHelper: bump compat for "BenchmarkTools" to "1.0" for package ParameterEstimation (#277) (@github-actions[bot]) - Fix DynamicalODE Benchmarks (#278) (@SebastianM-C) - update to add QNDF (#280) (@ChrisRackauckas) - update BCR benchmarks (#281) (@ChrisRackauckas) - Stop the autodiff explosion in BCR (#283) (@ChrisRackauckas) - Update 2 of the Jumps benchmarks to use Catalyst (#286) (@Gregliest) - Update README instructions. (#287) (@Gregliest) - [WIP] Fix Diffusion benchmark. (#288) (@Gregliest) - Fix Mendes Benchmark (#289) (@Gregliest) - CompatHelper: add new compat entry for "ModelingToolkit" at version "5" for package Jumps (#290) (@github-actions[bot]) - CompatHelper: bump compat for "DiffEqJump" to "7" for package Jumps (#292) (@github-actions[bot]) - CompatHelper: bump compat for "Catalyst" to "7" for package Bio (#293) (@github-actions[bot]) - CompatHelper: bump compat for "Catalyst" to "7" for package Jumps (#294) (@github-actions[bot]) - CompatHelper: bump compat for "ReactionNetworkImporters" to "0.9" for package Bio (#295) (@github-actions[bot]) - CompatHelper: bump compat for "ModelingToolkit" to "6" for package Bio (#296) (@github-actions[bot]) - CompatHelper: bump compat for "ModelingToolkit" to "6" for package Jumps (#297) (@github-actions[bot]) - CompatHelper: bump compat for ReactionNetworkImporters to 0.10 for package Bio, (keep existing compat) (#299) (@github-actions[bot]) - CompatHelper: bump compat for Catalyst to 8 for package Bio, (keep existing compat) (#300) (@github-actions[bot]) - CompatHelper: bump compat for Catalyst to 8 for package Jumps, (keep existing compat) (#301) (@github-actions[bot]) - CompatHelper: bump compat for Catalyst to 8 for package Bio, (keep existing compat) (#302) (@github-actions[bot]) - CompatHelper: bump compat for ReactionNetworkImporters to 0.10 for package Bio, (keep existing compat) (#303) (@github-actions[bot]) - CompatHelper: bump compat for Catalyst to 8 for package Jumps, (keep existing compat) (#304) (@github-actions[bot]) - CompatHelper: bump compat for ReactionNetworkImporters to 0.11 for package Bio, (keep existing compat) (#305) (@github-actions[bot]) - CompatHelper: bump compat for Catalyst to 9 for package Bio, (keep existing compat) (#306) (@github-actions[bot]) - CompatHelper: bump compat for Catalyst to 9 for package Jumps, (keep existing compat) (#307) (@github-actions[bot]) - update BCR and its manifest (#308) (@isaacsas) - Remove the pdf and notebook defaults (#311) (@ChrisRackauckas) - CompatHelper: bump compat for Catalyst to 10 for package Jumps, (keep existing compat) (#313) (@github-actions[bot]) - CompatHelper: bump compat for ModelingToolkit to 7 for package Bio, (keep existing compat) (#315) (@github-actions[bot]) - CompatHelper: bump compat for ModelingToolkit to 7 for package Jumps, (keep existing compat) (#316) (@github-actions[bot]) - CompatHelper: bump compat for DiffEqJump to 8 for package Jumps, (keep existing compat) (#317) (@github-actions[bot]) - CompatHelper: bump compat for ReactionNetworkImporters to 0.12 for package Bio, (keep existing compat) (#318) (@github-actions[bot]) - Update bcr for defaults (#320) (@isaacsas) - Add FBDF to the benchmarks (#321) (@YingboMa) - Move CI to `juliaecosystem` (#322) (@staticfloat) - No pdf (#323) (@ChrisRackauckas) - fix test, again (#324) (@ChrisRackauckas) - Fix VanderPol and Rober benchmark (#326) (@junpenggao233) - Add NeuralPDE Paper Benchmarks (#327) (@ChrisRackauckas) - CompatHelper: add new compat entry for QuasiMonteCarlo at version 0.2 for package PINNErrorsVsTime, (keep existing compat) (#328) (@github-actions[bot]) - CompatHelper: add new compat entry for Cuba at version 2 for package PINNErrorsVsTime, (keep existing compat) (#329) (@github-actions[bot]) - CompatHelper: add new compat entry for Optim at version 1 for package PINNErrorsVsTime, (keep existing compat) (#330) (@github-actions[bot]) - CompatHelper: add new compat entry for DiffEqFlux at version 1 for package PINNErrorsVsTime, (keep existing compat) (#331) (@github-actions[bot]) - CompatHelper: add new compat entry for NeuralPDE at version 4 for package PINNErrorsVsTime, (keep existing compat) (#332) (@github-actions[bot]) - CompatHelper: add new compat entry for Quadrature at version 1 for package PINNErrorsVsTime, (keep existing compat) (#333) (@github-actions[bot]) - CompatHelper: add new compat entry for Flux at version 0.12 for package PINNErrorsVsTime, (keep existing compat) (#334) (@github-actions[bot]) - CompatHelper: add new compat entry for ModelingToolkit at version 7 for package PINNErrorsVsTime, (keep existing compat) (#335) (@github-actions[bot]) - CompatHelper: add new compat entry for Cubature at version 1 for package PINNErrorsVsTime, (keep existing compat) (#336) (@github-actions[bot]) - CompatHelper: add new compat entry for GalacticOptim at version 2 for package PINNErrorsVsTime, (keep existing compat) (#337) (@github-actions[bot]) - CompatHelper: add new compat entry for NeuralPDE at version 4 for package PINNOptimizers, (keep existing compat) (#338) (@github-actions[bot]) - CompatHelper: add new compat entry for Plots at version 1 for package PINNOptimizers, (keep existing compat) (#339) (@github-actions[bot]) - CompatHelper: add new compat entry for GalacticOptim at version 2 for package PINNOptimizers, (keep existing compat) (#340) (@github-actions[bot]) - CompatHelper: add new compat entry for DiffEqFlux at version 1 for package PINNOptimizers, (keep existing compat) (#341) (@github-actions[bot]) - CompatHelper: add new compat entry for Cubature at version 1 for package PINNOptimizers, (keep existing compat) (#342) (@github-actions[bot]) - CompatHelper: add new compat entry for Cuba at version 2 for package PINNOptimizers, (keep existing compat) (#343) (@github-actions[bot]) - CompatHelper: add new compat entry for ModelingToolkit at version 7 for package PINNOptimizers, (keep existing compat) (#344) (@github-actions[bot]) - CompatHelper: add new compat entry for Optim at version 1 for package PINNOptimizers, (keep existing compat) (#345) (@github-actions[bot]) - CompatHelper: add new compat entry for Quadrature at version 1 for package PINNOptimizers, (keep existing compat) (#346) (@github-actions[bot]) - CompatHelper: add new compat entry for Flux at version 0.12 for package PINNOptimizers, (keep existing compat) (#347) (@github-actions[bot]) - Fix a bunch of PINN benchmarks (#348) (@ChrisRackauckas) - CompatHelper: add new compat entry for SciMLBenchmarks at version 0.1 for package PINNErrorsVsTime, (keep existing compat) (#349) (@github-actions[bot]) - CompatHelper: add new compat entry for SciMLBenchmarks at version 0.1 for package PINNOptimizers, (keep existing compat) (#350) (@github-actions[bot]) - Fix burger's equation PINN chain definition (#351) (@ChrisRackauckas) - Actually decrypt the SSH deploy key. (#352) (@staticfloat) - Fix Allen Cahn pinn (#355) (@KirillZubov) - ROBER DAE Benchmark (#357) (@ChrisRackauckas) - DAE manifests for v1.6 (#361) (@ChrisRackauckas) - CompatHelper: add new compat entry for SciMLBenchmarks at version 0.1 for package DAE, (keep existing compat) (#363) (@github-actions[bot]) - CompatHelper: add new compat entry for Plots at version 1 for package DAE, (keep existing compat) (#364) (@github-actions[bot]) - CompatHelper: add new compat entry for DASSL at version 2 for package DAE, (keep existing compat) (#365) (@github-actions[bot]) - CompatHelper: add new compat entry for DASKR at version 2 for package DAE, (keep existing compat) (#366) (@github-actions[bot]) - Smash SUNDIALS IDA in another DAE benchmark (Chemical Akzo) (#367) (@ChrisRackauckas) - Update burgers_equation.jmd (#369) (@francescocalisto) - Fix Chemical Akzo Benchmark (#370) (@AayushSabharwal) - Fix a bunch of PINN benchmarks (#371) (@ChrisRackauckas) - Fix a bunch of PINN benchmarks v2 (#374) (@KirillZubov) - Try running `Pkg.build()` for `conda` (#375) (@staticfloat) - CompatHelper: bump compat for OrdinaryDiffEq to 6 for package Bio, (keep existing compat) (#376) (@github-actions[bot]) - CompatHelper: bump compat for OrdinaryDiffEq to 6 for package DAE, (keep existing compat) (#377) (@github-actions[bot]) - CompatHelper: bump compat for OrdinaryDiffEq to 6 for package DynamicalODE, (keep existing compat) (#378) (@github-actions[bot]) - CompatHelper: bump compat for OrdinaryDiffEq to 6 for package Jumps, (keep existing compat) (#379) (@github-actions[bot]) - CompatHelper: bump compat for OrdinaryDiffEq to 6 for package MOLPDE, (keep existing compat) (#380) (@github-actions[bot]) - CompatHelper: bump compat for OrdinaryDiffEq to 6 for package MultiLanguage, (keep existing compat) (#381) (@github-actions[bot]) - CompatHelper: bump compat for OrdinaryDiffEq to 6 for package NBodySimulator, (keep existing compat) (#382) (@github-actions[bot]) - CompatHelper: bump compat for OrdinaryDiffEq to 6 for package NonStiffODE, (keep existing compat) (#383) (@github-actions[bot]) - CompatHelper: bump compat for OrdinaryDiffEq to 6 for package ParameterEstimation, (keep existing compat) (#384) (@github-actions[bot]) - CompatHelper: bump compat for OrdinaryDiffEq to 6 for package StiffODE, (keep existing compat) (#385) (@github-actions[bot]) - CompatHelper: bump compat for ModelingToolkit to 8 for package Bio, (keep existing compat) (#386) (@github-actions[bot]) - CompatHelper: bump compat for ModelingToolkit to 8 for package DAE, (keep existing compat) (#387) (@github-actions[bot]) - CompatHelper: bump compat for ModelingToolkit to 8 for package Jumps, (keep existing compat) (#388) (@github-actions[bot]) - CompatHelper: bump compat for ModelingToolkit to 8 for package PINNErrorsVsTime, (keep existing compat) (#389) (@github-actions[bot]) - CompatHelper: add new compat entry for Plots at version 1 for package PINNErrorsVsTime, (keep existing compat) (#390) (@github-actions[bot]) - CompatHelper: bump compat for ModelingToolkit to 8 for package PINNOptimizers, (keep existing compat) (#391) (@github-actions[bot]) - Try to generate doc pages (#392) (@ChrisRackauckas) - Update the stiff ODE benchmarks (#394) (@ChrisRackauckas) - Fix typo necesarly for necessarily (#395) (@traversaro) - Parallel Extrapolation Methods Benchmarks (#396) (@utkarsh530) - Show threads in test (#398) (@staticfloat) - Bump stiff ODE benchmarks (#400) (@ChrisRackauckas) - fix Van Der Pol (#401) (@ChrisRackauckas) - CompatHelper: add new compat entry for GeometricIntegratorsDiffEq at version 0.2 for package StiffODE, (keep existing compat) (#402) (@github-actions[bot]) - CompatHelper: add new compat entry for SparsityDetection at version 0.3 for package StiffODE, (keep existing compat) (#403) (@github-actions[bot]) - Bump nonstiff ODE benchmarks (#405) (@ChrisRackauckas) - fbdf update (#406) (@ChrisRackauckas) - bump dae tests (#407) (@ChrisRackauckas) - Continuing Extrapolation Improvements (#410) (@utkarsh530) - [WIP][Don't Merge]Improvements in Parallel Extrapolation Benchmarks (#411) (@utkarsh530) - Simpler BRUSS plot (#412) (@ChrisRackauckas) - CompatHelper: add new compat entry for BenchmarkTools at version 1 for package StiffODE, (keep existing compat) (#415) (@github-actions[bot]) - CompatHelper: add new compat entry for ProfileSVG at version 0.2 for package StiffODE, (keep existing compat) (#416) (@github-actions[bot]) - CompatHelper: add new compat entry for LinearSolve at version 1 for package StiffODE, (keep existing compat) (#417) (@github-actions[bot]) - CompatHelper: bump compat for Flux to 0.13 for package PINNErrorsVsTime, (keep existing compat) (#418) (@github-actions[bot]) - CompatHelper: bump compat for Flux to 0.13 for package PINNOptimizers, (keep existing compat) (#419) (@github-actions[bot]) - Lock cryptic to v2, resign treehashes (#426) (@staticfloat) - CompatHelper: bump compat for Catalyst to 12 for package Bio, (keep existing compat) (#429) (@github-actions[bot]) - CompatHelper: bump compat for Catalyst to 12 for package Jumps, (keep existing compat) (#430) (@github-actions[bot]) - CompatHelper: bump compat for DiffEqBayes to 3 for package ParameterEstimation, (keep existing compat) (#431) (@github-actions[bot]) - Update NonStiffODE benchmarks (#435) (@utkarsh530) - update nonstiff benchmarks (#436) (@ChrisRackauckas) - Update Parallel Extrapolation Benchmarks (#437) (@utkarsh530) - Fix some benchmarks (#438) (@utkarsh530) - try another nonstiff bump (#439) (@ChrisRackauckas) - CompatHelper: add new compat entry for JLD2 at version 0.4 for package Bio, (keep existing compat) (#440) (@github-actions[bot]) - simplify BCR (#441) (@ChrisRackauckas) - Bump to v1.7 and try stiff ODE (#442) (@ChrisRackauckas) - bump DAE manifest (#443) (@ChrisRackauckas) - bump nonstiff DDE (#444) (@ChrisRackauckas) - bump nonstiff SDE (#445) (@ChrisRackauckas) - bump stiff DDE (#446) (@ChrisRackauckas) - bump stiff SDE (#447) (@ChrisRackauckas) - bump jump equation benchmarks (#448) (@ChrisRackauckas) - bump dynamical ode tests (#449) (@ChrisRackauckas) - Include Rodas5 where it is significantly faster than Rodas4 (#452) (@utkarsh530) - Bump NeuralPDE v5 benchmarks (#453) (@ChrisRackauckas) - Set concurrency group for benchmark uploading (#454) (@staticfloat) - CompatHelper: add new compat entry for IntegralsCuba at version 0.2 for package PINNErrorsVsTime, (keep existing compat) (#458) (@github-actions[bot]) - CompatHelper: add new compat entry for IntegralsCubature at version 0.2 for package PINNErrorsVsTime, (keep existing compat) (#459) (@github-actions[bot]) - CompatHelper: add new compat entry for Integrals at version 3 for package PINNErrorsVsTime, (keep existing compat) (#460) (@github-actions[bot]) - CompatHelper: add new compat entry for Lux at version 0.4 for package PINNErrorsVsTime, (keep existing compat) (#461) (@github-actions[bot]) - CompatHelper: add new compat entry for OptimizationFlux at version 0.1 for package PINNErrorsVsTime, (keep existing compat) (#462) (@github-actions[bot]) - CompatHelper: add new compat entry for Optimization at version 3 for package PINNErrorsVsTime, (keep existing compat) (#463) (@github-actions[bot]) - CompatHelper: add new compat entry for OptimizationOptimJL at version 0.1 for package PINNErrorsVsTime, (keep existing compat) (#464) (@github-actions[bot]) - CompatHelper: add new compat entry for OptimizationFlux at version 0.1 for package PINNOptimizers, (keep existing compat) (#465) (@github-actions[bot]) - CompatHelper: add new compat entry for Lux at version 0.4 for package PINNOptimizers, (keep existing compat) (#466) (@github-actions[bot]) - CompatHelper: add new compat entry for OptimizationOptimJL at version 0.1 for package PINNOptimizers, (keep existing compat) (#467) (@github-actions[bot])
## SciMLBenchmarks v0.1.0 **Closed issues:** - Pictures (#1) - Benchmarks for Dynamical ODEs (#2) - Benchmarks for DDEs (#3) - Benchmarks for stiff SDEs (#5) - Issue with DiffEqBase in LorenzParameter Estimation (#13) - Benchmarks for SSA/jump systems (#25) - Convert benchmarks to use Weave.jl (#29) - Benchmarks for ExpRK methods (#30) - Wheldon, Kirk, and Finlay (#33) - Regressions from v1.0 upgrade (#37) - Weak SDE estimation is currently broken (#40) - DiffEqBayesLorenz and DiffEqBayesLotkaVolterra need to be re-ran (#41) - Filament needs to be fixed (#42) - Jump equations need to run (#43) - Oval2 Timings need an update (#46) - BCR import location (#55) - Pleiades (#95) - Precompilation broken on julia 1.5 beta1 (#105) - Build log (#116) - Re-run stiff ODE benchmarks (#128) - Re-run DynamicalODE benchmarks (#131) - update BCR benchmark for Catalyst (#169) **Merged pull requests:** - Add benchmarks of constant delay DDEs (#4) (@devmotion) - Add DynamicalODE (#7) (@SebastianM-C) - Update DDE benchmarks (#8) (@devmotion) - Fix DDE interpolation and add Rodas5 to QS (#9) (@devmotion) - Update DynamicalODE (#10) (@SebastianM-C) - Added notebooks for DiffEqBayes benchmarking (#11) (@Vaibhavdixit02) - Modifications to summary and update to new syntax (#12) (@Vaibhavdixit02) - DiffEqBayes Benchmarks for LV and Lorenz equation (#16) (@Vaibhavdixit02) - Use plot_chain for turing_inference (#18) (@Vaibhavdixit02) - Notebook for Lotka Volterra parameter estimation with optimisation methods (#19) (@Vaibhavdixit02) - Update the Readme summary and typo in Lorenz notebook (#20) (@Vaibhavdixit02) - FitzHugh-Nagumo Parameter estimation using optimization methods. (#21) (@Vaibhavdixit02) - Updates to Readme and some changes in LV notebook (#22) (@Vaibhavdixit02) - Added QuadDIRECT to the optimization methods benchmarks for parameter estimation (#23) (@Vaibhavdixit02) - jump benchmarks (#26) (@isaacsas) - RFC: Restructure benchmarks to use Weave instead of notebooks (#32) (@ChrisRackauckas) - Update parameter estimation benchmarks (#36) (@Vaibhavdixit02) - Add Project.toml (#38) (@asinghvi17) - Benchmark jmd files for ROCK2 and ROCK4 (#39) (@deeepeshthakur) - Updated the filament benchmark (#44) (@dextorious) - added four differential equations (#45) (@HH3117) - created the PDE folder (#48) (@HH3117) - add extrapolation methods (#49) (@saurabhkgp21) - Update DiffEqBayesLotkaVolterra.jl for breaking uncertainity/uncertainty typo (#50) (@jamesjscully) - BCR chemical reaction system benchmarks (#52) (@ChrisRackauckas) - Update jump benchmarks (#54) (@isaacsas) - CompatHelper: add new compat entry for "DataFrames" at version "0.19" (#57) (@github-actions[bot]) - CompatHelper: add new compat entry for "RecursiveFactorization" at version "0.1" (#58) (@github-actions[bot]) - CompatHelper: add new compat entry for "ReactionNetworkImporters" at version "0.1" (#59) (@github-actions[bot]) - CompatHelper: add new compat entry for "IJulia" at version "1.20" (#60) (@github-actions[bot]) - CompatHelper: add new compat entry for "BlackBoxOptim" at version "0.5" (#61) (@github-actions[bot]) - CompatHelper: add new compat entry for "DiffEqDevTools" at version "2.15" (#62) (@github-actions[bot]) - CompatHelper: add new compat entry for "ParameterizedFunctions" at version "4.2" (#63) (@github-actions[bot]) - CompatHelper: add new compat entry for "DiffEqJump" at version "6.2" (#64) (@github-actions[bot]) - CompatHelper: add new compat entry for "Weave" at version "0.9" (#65) (@github-actions[bot]) - CompatHelper: add new compat entry for "ApproxFun" at version "0.11" (#66) (@github-actions[bot]) - CompatHelper: add new compat entry for "ODEInterfaceDiffEq" at version "3.4" (#67) (@github-actions[bot]) - CompatHelper: add new compat entry for "OrdinaryDiffEq" at version "5.23" (#68) (@github-actions[bot]) - CompatHelper: add new compat entry for "ODEInterface" at version "0.4" (#69) (@github-actions[bot]) - CompatHelper: add new compat entry for "ODE" at version "2.5" (#70) (@github-actions[bot]) - CompatHelper: add new compat entry for "DiffEqProblemLibrary" at version "4.5" (#71) (@github-actions[bot]) - CompatHelper: add new compat entry for "DiffEqUncertainty" at version "1.3" (#72) (@github-actions[bot]) - CompatHelper: add new compat entry for "LSODA" at version "0.6" (#73) (@github-actions[bot]) - CompatHelper: add new compat entry for "DiffEqBiological" at version "4.0" (#74) (@github-actions[bot]) - CompatHelper: add new compat entry for "SteadyStateDiffEq" at version "1.5" (#75) (@github-actions[bot]) - CompatHelper: add new compat entry for "Sundials" at version "3.8" (#76) (@github-actions[bot]) - CompatHelper: add new compat entry for "NLopt" at version "0.5" (#77) (@github-actions[bot]) - CompatHelper: add new compat entry for "DiffEqParamEstim" at version "1.8" (#78) (@github-actions[bot]) - CompatHelper: add new compat entry for "Plots" at version "0.27" (#79) (@github-actions[bot]) - CompatHelper: add new compat entry for "NLopt" at version "0.5" (#80) (@github-actions[bot]) - Save all figures as SVG (#81) (@asinghvi17) - Default html to svg (#82) (@ChrisRackauckas) - CompatHelper: bump compat for "Plots" to "0.28" (#83) (@github-actions[bot]) - CompatHelper: bump compat for "DataFrames" to "0.20" (#84) (@github-actions[bot]) - Update BCR benchmark to use correct path (#85) (@isaacsas) - CompatHelper: add new compat entry for "DiffEqBase" at version "6.7" (#86) (@github-actions[bot]) - CompatHelper: add new compat entry for "DifferentialEquations" at version "6.9" (#87) (@github-actions[bot]) - CompatHelper: add new compat entry for "ParallelDataTransfer" at version "0.5" (#88) (@github-actions[bot]) - Myb/noauto (#89) (@ChrisRackauckas) - CompatHelper: bump compat for "Plots" to "0.29" (#92) (@github-actions[bot]) - Install TagBot as a GitHub Action (#93) (@JuliaTagBot) - CompatHelper: bump compat for "ParameterizedFunctions" to "5.0" (#94) (@github-actions[bot]) - CompatHelper: bump compat for "Plots" to "1.0" (#96) (@github-actions[bot]) - CompatHelper: bump compat for "Sundials" to "4.0" (#97) (@github-actions[bot]) - Update DiffEqBayes benchmarks (#98) (@Vaibhavdixit02) - CompatHelper: add new compat entry for "DiffEqBayes" at version "2.9" (#99) (@github-actions[bot]) - CompatHelper: bump compat for "DataFrames" to "0.21" (#100) (@github-actions[bot]) - Use `truncated` instead of `Truncated` (#101) (@devmotion) - CompatHelper: bump compat for "NLopt" to "0.6" (#102) (@github-actions[bot]) - Add NBodySimulator benchmarks (#106) (@SebastianM-C) - Rebuild benchmarks (#108) (@christopher-dG) - Move to separate projects (#109) (@christopher-dG) - CompatHelper: bump compat for "DiffEqNoiseProcess" to "5.0" for package AdaptiveSDE (#110) (@github-actions[bot]) - CompatHelper: bump compat for "DiffEqMonteCarlo" to "1.0" for package AdaptiveSDE (#111) (@github-actions[bot]) - CompatHelper: bump compat for "DiffEqNoiseProcess" to "5.0" for package StiffSDE (#112) (@github-actions[bot]) - Rebuild StiffSDE/QuadraticStiffness.jmd (#114) (@github-actions[bot]) - Activate project env (#115) (@christopher-dG) - Rebuild NonStiffODE/FitzhughNagumo_wpd.jmd, NonStiffODE/LotkaVolterra_wpd.jmd, NonStiffODE/Pleiades_wpd.jmd, NonStiffODE/RigidBody_wpd.jmd, NonStiffODE/ThreeBody_wpd.jmd, NonStiffODE/linear_wpd.jmd (#117) (@github-actions[bot]) - Rebuild Jumps/Diffusion_CTRW.jmd, Jumps/Mendes_multistate_example.jmd, Jumps/NegFeedback_GeneExpr.jmd, Jumps/NegFeedback_GeneExpr_Marchetti.jmd (#119) (@github-actions[bot]) - Rebuild StiffSDE/Oval2LongRun.jmd, StiffSDE/Oval2LongTimes.jmd, StiffSDE/Oval2Timings.jmd, StiffSDE/QuadraticStiffness.jmd, StiffSDE/StochasticHeat.jmd (#123) (@github-actions[bot]) - Rebuild NonStiffDDE/Mackey_Glass_wpd.jmd, NonStiffDDE/Wheldon_Kirk_Finlay_wpd.jmd (#125) (@github-actions[bot]) - Rebuild StiffDDE/QuorumSensing.jmd (#127) (@github-actions[bot]) - Rebuild StiffSDE/StochasticHeat.jmd (#133) (@github-actions[bot]) - Rebuild Jumps/Mendes_multistate_example.jmd (#134) (@github-actions[bot]) - Rebuild NonStiffDDE/Mackey_Glass_wpd.jmd (#135) (@github-actions[bot]) - Avoid module usage (#136) (@SebastianM-C) - Add missing package (#139) (@SebastianM-C) - CompatHelper: add new compat entry for "StatsPlots" at version "0.14" for package NBodySimulator (#140) (@github-actions[bot]) - CompatHelper: add new compat entry for "StaticArrays" at version "0.12" for package NBodySimulator (#141) (@github-actions[bot]) - CompatHelper: add new compat entry for "Plots" at version "1.5" for package NBodySimulator (#142) (@github-actions[bot]) - CompatHelper: add new compat entry for "OrdinaryDiffEq" at version "5.41" for package NBodySimulator (#143) (@github-actions[bot]) - CompatHelper: add new compat entry for "ProgressLogging" at version "0.1" for package NBodySimulator (#144) (@github-actions[bot]) - CompatHelper: add new compat entry for "DataFrames" at version "0.21" for package NBodySimulator (#145) (@github-actions[bot]) - CompatHelper: add new compat entry for "NBodySimulator" at version "1.3" for package NBodySimulator (#146) (@github-actions[bot]) - CompatHelper: add new compat entry for "BenchmarkTools" at version "0.5" for package NBodySimulator (#147) (@github-actions[bot]) - Rebuild NonStiffODE/ThreeBody_wpd.jmd (#149) (@github-actions[bot]) - Finish renaming DiffEqBenchmarks -> SciMLBenchmarks (#150) (@christopher-dG) - Rebuild MOLPDE/ks_spectral_wpd.jmd (#153) (@github-actions[bot]) - Rebuild MOLPDE/burgers_spectral_wpd.jmd (#154) (@github-actions[bot]) - Rebuild StiffDDE/QuorumSensing.jmd (#156) (@github-actions[bot]) - Special case for TaylorIntegration (#157) (@SebastianM-C) - Rebuild NonStiffODE/LotkaVolterra_wpd.jmd (#159) (@github-actions[bot]) - CompatHelper: bump compat for "ReactionNetworkImporters" to "0.2" for package StiffODE (#161) (@github-actions[bot]) - CompatHelper: bump compat for "ApproxFun" to "0.12" for package MOLPDE (#162) (@github-actions[bot]) - CompatHelper: bump compat for "Distributions" to "0.24" for package ParameterEstimation (#165) (@github-actions[bot]) - MassInstallAction: Install the TagBot workflow on this repository (#166) (@christopher-dG) - CompatHelper: bump compat for "DataFrames" to "0.22" for package Jumps (#167) (@github-actions[bot]) - CompatHelper: bump compat for "DataFrames" to "0.22" for package NBodySimulator (#168) (@github-actions[bot]) - CompatHelper: bump compat for "StaticArrays" to "1.0" for package DynamicalODE (#170) (@github-actions[bot]) - CompatHelper: bump compat for "StaticArrays" to "1.0" for package NBodySimulator (#171) (@github-actions[bot]) - CompatHelper: bump compat for "ReactionNetworkImporters" to "0.3" for package StiffODE (#172) (@github-actions[bot]) - CompatHelper: bump compat for "GeometricIntegratorsDiffEq" to "0.2" for package StiffODE (#174) (@github-actions[bot]) - Update BCR benchmark to Catalyst and MT (#175) (@isaacsas) - Remove ReactionNetworkImporters dep for StiffOdes (#177) (@isaacsas) - CompatHelper: add new compat entry for "OrdinaryDiffEq" at version "5.47" for package Bio (#178) (@github-actions[bot]) - CompatHelper: bump compat for "ReactionNetworkImporters" to "0.5" for package Bio (#180) (@github-actions[bot]) - CompatHelper: bump compat for "ODEInterface" to "0.5" for package Bio (#182) (@github-actions[bot]) - CompatHelper: bump compat for "ODEInterface" to "0.5" for package MultiLanguage (#183) (@github-actions[bot]) - CompatHelper: bump compat for "ODEInterface" to "0.5" for package NonStiffODE (#184) (@github-actions[bot]) - CompatHelper: bump compat for "ReactionNetworkImporters" to "0.6" for package Bio (#186) (@github-actions[bot]) - CompatHelper: bump compat for "MATLABDiffEq" to "1.0" for package MultiLanguage (#187) (@github-actions[bot]) - CompatHelper: bump compat for "ReactionNetworkImporters" to "0.7" for package Bio (#188) (@github-actions[bot]) - CompatHelper: bump compat for "BenchmarkTools" to "0.6" for package NBodySimulator (#189) (@github-actions[bot]) - CompatHelper: bump compat for "BenchmarkTools" to "0.6" for package ParameterEstimation (#190) (@github-actions[bot]) - CompatHelper: bump compat for "BenchmarkTools" to "0.7" for package NBodySimulator (#191) (@github-actions[bot]) - CompatHelper: bump compat for "BenchmarkTools" to "0.7" for package ParameterEstimation (#192) (@github-actions[bot]) - [WIP] This adds the buildkite setup (#193) (@ven-k) - CompatHelper: bump compat for "LSODA" to "0.7" for package Bio (#194) (@github-actions[bot]) - CompatHelper: bump compat for "LSODA" to "0.7" for package MOLPDE (#195) (@github-actions[bot]) - CompatHelper: bump compat for "LSODA" to "0.7" for package NonStiffODE (#196) (@github-actions[bot]) - CompatHelper: bump compat for "LSODA" to "0.7" for package StiffODE (#197) (@github-actions[bot]) - This adds files to weekly update all the directories. (#199) (@ven-k) - CompatHelper: bump compat for "DataFrames" to "1.0" for package Jumps (#200) (@github-actions[bot]) - CompatHelper: bump compat for "DataFrames" to "1.0" for package NBodySimulator (#201) (@github-actions[bot]) - Fix some grammar in linear wpd (#202) (@ChrisRackauckas) - CompatHelper: add new compat entry for "Git" at version "1.2" (#204) (@github-actions[bot]) - use the exclusive tag with the buildkite pipeline (#205) (@ChrisRackauckas) - Registry is General (#206) (@ven-k) - Set timeout to 4 hrs and update only changed artifacts (#207) (@ven-k) - Watch Project.toml and upload the specific artifacts (#208) (@ven-k) - Setup project/manifest for nonstiff ODE (#209) (@ChrisRackauckas) - Add "watch toml" in pipeline.yml (#210) (@ven-k) - update nonstiff ode manifest (#212) (@ChrisRackauckas) - [WIP] A separate watcher for each file (#213) (@ven-k) - Update rebuild_models.jl (#214) (@staticfloat) - update for Weave's silent mega breaking change (#215) (@ChrisRackauckas) - Update linear_wpd.jmd (#216) (@ChrisRackauckas) - CompatHelper: bump compat for "Distributions" to "0.25" for package ParameterEstimation (#218) (@github-actions[bot]) - Split `SciMLBenchmarks` into two repositories (#219) (@staticfloat) - Fix activation (#220) (@staticfloat) - Update Sundials version for NonStiffODE (#221) (@ChrisRackauckas) - Manual S3 uploading (#222) (@staticfloat) - Updated AdaptiveSDE for benchmarks (#223) (@github-actions[bot]) - Remove extra /html or /pdf or etc. (#224) (@ChrisRackauckas) - CompatHelper: add new compat entry for "Plots" at version "1.13" for package Testing (#225) (@github-actions[bot]) - bump nonstiff ODE packages for FastBroadcast.jl (#226) (@ChrisRackauckas) - Setup and run stiff ODE benchmarks (#227) (@ChrisRackauckas) - update Bio benchmarks (#228) (@ChrisRackauckas) - remove threads setting in StiffODE (#231) (@ChrisRackauckas) - update NBodySimulator benchmarks (#232) (@ChrisRackauckas) - update NonStiffDDE benchmarks (#233) (@ChrisRackauckas) - update NonStiffSDE benchmarks (#234) (@ChrisRackauckas) - update StiffDDE benchmarks (#235) (@ChrisRackauckas) - update StiffSDE benchmarks (#236) (@ChrisRackauckas) - update ParameterEstimation benchmarks (#237) (@ChrisRackauckas) - CompatHelper: bump compat for "DynamicHMC" to "3.1" for package ParameterEstimation (#238) (@github-actions[bot]) - re-run stiff ODE on AMDCI (#239) (@ChrisRackauckas) - rerun NonStiffODE on AMDCI (#240) (@ChrisRackauckas) - CompatHelper: add new compat entry for "ModelingToolkit" at version "5.17" for package Bio (#241) (@github-actions[bot])