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19 stars written in R
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An implementation of the Grammar of Graphics in R

R 6,839 2,116 Updated Dec 18, 2025

📊 A universal enrichment tool for interpreting omics data

R 1,150 263 Updated Dec 23, 2025
R 855 531 Updated Oct 18, 2022

R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data

R 752 166 Updated Jan 6, 2024

R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics

R 509 93 Updated Oct 7, 2025

High dimensional weighted gene co-expression network analysis

R 452 47 Updated Oct 23, 2025

🦠 Interactive dashboard for real-time recording of COVID-19 outbreak in Japan

R 412 92 Updated Dec 17, 2022

Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)

R 303 80 Updated Oct 16, 2025

Tools and methods for analysis of single cell assay data in R

R 258 57 Updated Oct 17, 2025

An implement R package to visualize GSEA results

R 202 16 Updated Dec 8, 2025

Some tools for plotting single-cell data

R 176 31 Updated May 17, 2025

NAguideR: performing and prioritizing missing value imputations for consistent bottom-up proteomic analyses

R 50 4 Updated Aug 12, 2025

A human universal senescence index to evaluate celluar senescence

R 33 7 Updated Sep 11, 2025

DEP package

R 30 13 Updated Sep 28, 2022

DEqMS is a tool for quantitative proteomic analysis

R 24 3 Updated Apr 16, 2025

Kinase-Substrate Enrichment Analysis (KSEA) App

R 10 5 Updated May 2, 2017

Saving Plot as Image in R

R 6 2 Updated Mar 12, 2021

Codes developed for "Single cell transcriptomic atlas of the human endometrium during the menstrual cycle"

R 5 1 Updated Jul 11, 2020