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  1. Ribofilio Ribofilio Public

    Ribofilio is a python tool to estimate ribosomes drop off rate.

    TeX

  2. SomaticMutations SomaticMutations Public

    This a snakemake pipeline to detect Somatic mutations (GATK4 and Mutect2)

    Python 3 2

  3. gatkVariantCalling gatkVariantCalling Public

    Snakemake pipeline for variant calling using GATK

    Python 5 1

  4. StructureVariations StructureVariations Public

    Snakemake pipeline for detecting, annotating, filtering and visualising structure variations and gene fusions from WGS/WES.

    Python 3

  5. CutRun CutRun Public

    Python

  6. mouse_Multiomics mouse_Multiomics Public

    scRNA and scATAC seq analysis for mouse brain data using Arhcr

    R