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@Ultimagen

Ultima Genomics

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  1. healthomics-workflows healthomics-workflows Public

    UltimaGenomics repository for workflows compatible with AWS HealthOmics

    WDL 33 16

  2. VariantCalling VariantCalling Public

    Ultima scripts related to downstream processing of WGS, MRD, methylation analysis

    Jupyter Notebook 11 1

  3. ugbio-utils ugbio-utils Public

    Ultima Genomics bioinfo-utils

    Python 3 1

  4. delly delly Public

    Forked from dellytools/delly

    DELLY2: Structural variant discovery by integrated paired-end and split-read analysis

    C++ 1

  5. levioSAM levioSAM Public

    Forked from alshai/levioSAM

    Lift-over alignments from variant-aware references

    C++ 1

  6. leviosam2 leviosam2 Public

    Forked from milkschen/leviosam2

    Fast and accurate coordinate conversion between assemblies

    C++ 1

Repositories

Showing 10 of 23 repositories
  • ugbio-utils Public

    Ultima Genomics bioinfo-utils

    Ultimagen/ugbio-utils's past year of commit activity
    Python 3 1 1 14 Updated Sep 23, 2026
  • parascopy Public Forked from tprodanov/parascopy

    Copy number estimation and variant calling for duplicated genes using WGS.

    Ultimagen/parascopy's past year of commit activity
    Python 0 MIT 7 0 1 Updated Sep 19, 2026
  • healthomics-workflows Public

    UltimaGenomics repository for workflows compatible with AWS HealthOmics

    Ultimagen/healthomics-workflows's past year of commit activity
    WDL 33 16 5 0 Updated Sep 7, 2026
  • gatk Public Forked from broadinstitute/gatk

    Official code repository for GATK versions 4 and up

    Ultimagen/gatk's past year of commit activity
    Java 0 633 0 3 Updated Aug 26, 2026
  • picard Public Forked from broadinstitute/picard

    A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

    Ultimagen/picard's past year of commit activity
    Java 0 MIT 386 0 0 Updated Aug 26, 2026
  • gridss Public Forked from PapenfussLab/gridss

    GRIDSS: the Genomic Rearrangement IDentification Software Suite

    Ultimagen/gridss's past year of commit activity
    Java 0 77 0 0 Updated Jul 15, 2026
  • HLA-LA Public Forked from DiltheyLab/HLA-LA

    Fast HLA type inference from whole-genome data

    Ultimagen/HLA-LA's past year of commit activity
    C++ 1 GPL-3.0 43 0 0 Updated Jun 29, 2026
  • VariantCalling Public

    Ultima scripts related to downstream processing of WGS, MRD, methylation analysis

    Ultimagen/VariantCalling's past year of commit activity
    Jupyter Notebook 11 Apache-2.0 1 7 5 Updated Jun 2, 2026
  • ichorCNA Public Forked from broadinstitute/ichorCNA

    Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.

    Ultimagen/ichorCNA's past year of commit activity
    R 0 GPL-3.0 103 0 1 Updated May 31, 2026
  • MethylDackel Public Forked from dpryan79/MethylDackel

    A (mostly) universal methylation extractor for BS-seq experiments.

    Ultimagen/MethylDackel's past year of commit activity
    C 0 MIT 50 0 0 Updated Apr 29, 2026

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