Perforator is a cluster-wide continuous profiling tool designed for large data centers

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

tools for working with genome variation graphs

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

Mummer alignment tool

RSEM: accurate quantification of gene and isoform expression from RNA-Seq data

TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files

Genotype Representation Graph Library

A Bayesian grouped mixture of regressions model capable of estimating SNP marker effect sizes for multiple outcomes simultaneously