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🚀 Efficient implementations of state-of-the-art linear attention models
⚡️SwanLab - an open-source, modern-design AI training tracking and visualization tool. Supports Cloud / Self-hosted use. Integrated with PyTorch / Transformers / verl / LLaMA Factory / ms-swift / U…
A Rust-Based suite of utilities for ultra-fast genomic feature extraction
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
The resources of LucaOne, including: the model code, training scripts, embedding inference code, and trained checkpoints.
Explore a comprehensive collection of basic theories, applications, papers, and best practices about Large Language Models (LLMs) in genomes.
ProTrek: illuminating the Protein Universe through Trimodal Protein Language Model
crussmap is a faster tool to convert genome coordinates between difference reference assemblies.
Perforator is a cluster-wide continuous profiling tool designed for large data centers
An interactive explorer for single-cell transcriptomics data
A trainable PyTorch reproduction of AlphaFold 3.
pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene reg…
《Hello 算法》：动画图解、一键运行的数据结构与算法教程。支持 Python, Java, C++, C, C#, JS, Go, Swift, Rust, Ruby, Kotlin, TS, Dart 代码。简体版和繁体版同步更新，English version in translation
PlantCAD: cross-species modeling of plant genomes
Speed up model training by fixing data loading.
A self-paced course to learn Rust, one exercise at a time.
Cython helper library for pyranges. Find nearest interval in linear time at C speed.
PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)
A Bayesian grouped mixture of regressions model capable of estimating SNP marker effect sizes for multiple outcomes simultaneously
A C++ drop-in replacement of FastQC to assess the quality of sequence read data
MMseqs2: ultra fast and sensitive search and clustering suite
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