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27 stars written in Java
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WebRTC plugin for Flutter Mobile/Desktop/Web

Java 4,456 1,355 Updated Apr 1, 2026

Compiles Java bytecode to JavaScript, WebAssembly and C

Java 3,025 311 Updated Apr 9, 2026
Java 625 85 Updated Aug 30, 2024

MISO: An open-source LIMS for NGS sequencing centres

Java 298 125 Updated Apr 10, 2026

Bayesian Evolutionary Analysis by Sampling Trees

Java 272 84 Updated Mar 27, 2026

Jasmine: SV Merging Across Samples

Java 246 21 Updated Dec 20, 2024

Bayesian Evolutionary Analysis Sampling Trees

Java 241 80 Updated Apr 9, 2026

SplitsTree App

Java 124 8 Updated Apr 11, 2026

Sketch phylogenetic trees and networks

Java 24 Updated Apr 11, 2026

A versatile simulation engine for stochastic population dynamics models.

Java 23 8 Updated Nov 11, 2022

PhyDyn: Epidemiological modelling in BEAST

Java 21 8 Updated Dec 22, 2022

LinguaPhylo: A language for describing, visualising and simulating probabilistic phylogenetic models

Java 20 7 Updated Mar 30, 2026

For all your cluster needs

Java 18 3 Updated Feb 3, 2023

A framework to build Software As A Service (SaaS) platforms for Nextflow pipelines.

Java 17 9 Updated Sep 6, 2025

SimRA (Simulation based on Random-graphs Algorithms) is a framework for simulating generic and complex evolutionary scenarios of multiple populations with subdivision and admixture. The algorithm g…

Java 13 5 Updated Nov 28, 2022

Tasty additions to BEAST 2

Java 12 3 Updated Apr 2, 2026

Adaptive parallel tempering for Beast2

Java 11 7 Updated Oct 8, 2024

Multi-type birth-death-sampling modelling for BEAST 2.

Java 9 10 Updated Feb 16, 2026

BEAST2 package to model recombination

Java 9 2 Updated Mar 23, 2023

A BEAST2 package for single-cell cancer evolution

Java 8 5 Updated Apr 9, 2026

Bayesian network toolkit, with applications for phylogenetic analysis

Java 8 1 Updated Apr 1, 2026

Beast2 implementation of the coalescent with reassortment

Java 7 1 Updated Apr 1, 2026

A Bayesian phylogenetic framework to estimate single-cell trees and population dynamic parameters from genetic lineage tracing data

Java 6 1 Updated Apr 6, 2026

Bayesian phylodynamic methods in BEAST2

Java 6 3 Updated Feb 22, 2023

BEAST2 implementation of the Coalescent with Plasmids-

Java 5 1 Updated Apr 2, 2026

Sequential Cas9 Insertion based Phylogenetics (SciPhy) for BEAST2

Java 5 2 Updated Apr 6, 2026

3Di substitution models for BEAST 2

Java 5 Updated Dec 29, 2025