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parse-ont mode does not generate all_read_isoform_exon_mapping.tsv

Status: Open.

#18 In WGLab/SCOTCH;

· zihian opened on Sep 7, 2026

Novel isoform ID generation can result in same transcript ID for transcripts in different genes

Status: Open.

#16 In WGLab/SCOTCH;

· zihian opened on Aug 3, 2026

Can't extract the bam file from pacbio

Status: Open.

#15 In WGLab/SCOTCH;

· linux51 opened on Jul 31, 2026

How to obtain example data?

Status: Open.

#11 In WGLab/SCOTCH;

· sun-fei2026 opened on Jun 1, 2026

Question: SCOTCH computational performance

Status: Open.

#10 In WGLab/SCOTCH;

· lianov opened on Mar 6, 2026

Input data from pacbio single cell long-read

Status: Open.

#8 In WGLab/SCOTCH;

· leewqa opened on Nov 24, 2025

Data released with the paper

Status: Open.

#2 In WGLab/SCOTCH;

· caravagn opened on Oct 10, 2024