Stars
Miscellaneous utility code used by scverse packages
Fast genomics quality control tools for sequencing data, written in Rust.
Fast and flexible implementation of generalized linear model in JAX
Empowering everyone to build reliable and efficient software.
Free Disk Space Action Inspired by jlumbroso/free-disk-space
⚙️🗑️ A GitHub Action to free disk space on an Ubuntu runner.
Nextflow plugin for reading properties of AnnData (h5ad) files
cuVS - a library for vector search and clustering on the GPU
Single-cell spatial omics analysis that makes you happy!
The website for the BioContextAI Registry and BioContextAI Chat.
Allows to retrieve information about an AnnData object via MCP
cz-benchmarks is a package for standardized evaluation and comparison of machine learning models for biological applications.
Configure Vitessce using existing Scverse plotting APIs
Convert AI Skills (Claude Skills format) to MCP server resources - Part of BioContextAI
Override and customize Python packages without touching their code
The machine learning toolkit for time series analysis in Python
The BioContextAI Registry for biomedical MCP servers
⚡ A Git hook manager written in Rust, designed as a drop-in alternative to pre-commit.
FHIR Resources https://www.hl7.org/fhir/resourcelist.html
Minibatch loading for on-disk anndata files, co-developed by Lamin Labs and scverse
A CodecPipeline for zarr-python backed by the zarrs Rust crate
LLM-powered personalized daily lists of scientific papers
Interactive Data Visualization in the browser, from Python
Automatically annotate cell types, consistently across samples.
An extremely fast Python type checker and language server, written in Rust.
Sparse multi-dimensional arrays for the PyData ecosystem