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cuVS - a library for vector search and clustering on the GPU

Cuda 597 147 Updated Dec 19, 2025

NumPy & SciPy for GPU

Python 10,673 980 Updated Dec 18, 2025

Single-cell spatial proteomics analysis that makes you happy!

Python 48 6 Updated Dec 16, 2025

High-Performance Sparse Matrix Library

Rust 16 Updated Nov 23, 2025

The website for the BioContextAI Registry and BioContextAI Chat.

TypeScript 4 Updated Dec 17, 2025

Allows to retrieve information about an AnnData object via MCP

Python 7 Updated Dec 8, 2025

cz-benchmarks is a package for standardized evaluation and comparison of machine learning models for biological applications.

Python 44 7 Updated Dec 19, 2025

Manage dependencies of tests

Python 165 39 Updated Aug 10, 2025

Configure Vitessce using existing Scverse plotting APIs

Python 16 4 Updated Dec 18, 2025

Convert AI Skills (Claude Skills format) to MCP server resources - Part of BioContextAI

Python 8 3 Updated Nov 6, 2025

Override and customize Python packages without touching their code

Python 392 5 Updated Dec 12, 2025

The machine learning toolkit for time series analysis in Python

Python 3,079 363 Updated Dec 17, 2025

The BioContextAI Registry for biomedical MCP servers

Python 19 11 Updated Dec 8, 2025

⚡ Better `pre-commit`, re-engineered in Rust

Rust 2,821 88 Updated Dec 19, 2025

FHIR Resources https://www.hl7.org/fhir/resourcelist.html

Python 492 119 Updated Sep 16, 2025

Minibatch loading for on-disk anndata files, co-developed by Lamin Labs and scverse

Python 20 3 Updated Dec 18, 2025

A CodecPipeline for zarr-python backed by the zarrs Rust crate

Python 58 4 Updated Dec 15, 2025

Holoviz Anndata Interface

Python 13 Updated Dec 15, 2025

LLM-powered personalized daily lists of scientific papers

Python 79 11 Updated Oct 20, 2025

Interactive Data Visualization in the browser, from Python

TypeScript 20,260 4,247 Updated Dec 19, 2025

Automatically annotate cell types, consistently across samples.

Python 17 1 Updated Dec 15, 2025

An extremely fast Python type checker and language server, written in Rust.

Python 15,032 157 Updated Dec 19, 2025

Sparse multi-dimensional arrays for the PyData ecosystem

Python 652 132 Updated Dec 15, 2025

A Git-compatible VCS that is both simple and powerful

Rust 23,266 848 Updated Dec 19, 2025

the portable Python dataframe library

Python 6,288 684 Updated Dec 18, 2025

Intuitive, easy CLIs based on python type hints.

Python 970 31 Updated Dec 18, 2025
Python 8 3 Updated Dec 16, 2025

Lightweight and extensible compatibility layer between dataframe libraries!

Python 1,432 176 Updated Dec 19, 2025

Linear Programming for Rust, with a user-friendly API. This crate allows modeling LP problems, and lets you solve them with various solvers.

Rust 406 49 Updated Nov 12, 2025
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