SpikeAgent is a multimodal LLM-based AI agent that automates and standardizes the spike sorting pipeline

Biomni: a general-purpose biomedical AI agent

Automated Model Inference from Neural Dynamics

Cycle-by-cycle analysis of neural oscillations.

NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a pythonist who really did not want to transition to MATLAB t…

A connectome-constrained deep mechanistic network (DMN) model of the fruit fly visual system in PyTorch.

a visualization method for neural data

A Python-based module for creating flexible and robust spike sorting pipelines.

Electrophysiology analysis in ventral midbrain-striatal-cortical organoids (MISCOs) pre- and post- optogenetic stimulation.

AntroPy: entropy and complexity of (EEG) time-series in Python

It's React, but in Python

Use ImageJ from Python

Deep probabilistic analysis of single-cell omics data

computes intrinsic cell features from intracellular electrophysiology data

Calibrated inference of spiking from calcium ΔF/F data using deep networks

Parameterizing neural power spectra into periodic & aperiodic components.