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@robinschmid robinschmid commented Feb 13, 2023

@tomas-pluskal @asmirn1
Can you confirm that we can remove this option?

This PR removes the option to export netCDF right after mass detection. People should use the module instead.

However we would need to enable that people can export mass lists instead of the original raw data in the module.

image

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Oh there are more problems with this.
We would then also need to add a ScanFilter to the netCDF export, but the method itself is MSDK

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@asmirn1, can you comment on this? We would like to remove the option from mass detection as an export does not belong with the fundamental data processing step

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asmirn1 commented Dec 19, 2023

@robinschmid I agree that the netCDF export isn't needed in the preprocessing step. I can remove it and make a merge request if you want me to.

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Thanks for confirming @asmirn1! No need to make an other PR. Would be great if you could review this one.

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asmirn1 commented Dec 19, 2023

The code looks good to me. MassDetectionTask is much cleaner now.

…t_mass_detect

# Conflicts:
#	src/main/java/io/github/mzmine/modules/dataprocessing/featdet_massdetection/MassDetectionParameters.java
@robinschmid robinschmid merged commit 5e28df4 into mzmine:master Jan 11, 2024
@robinschmid robinschmid deleted the remove_netcdf_export_mass_detect branch January 11, 2024 09:14
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3 participants