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cell-size Public
Software supporting Davies, P., Cavallaro, M. and Hebenstreit, D. (2025), Single-Calibration Cell Size Measurement With Flow Cytometry. Cytometry, 107: 263-270. https://doi.org/10.1002/cyto.a.24924
R UpdatedJul 7, 2025 -
CovidC Public
Software supporting M. Cavallaro, et al., Contrasting factors associated with COVID-19-related ICU admission and death outcomes in hospitalised patients by means of Shapley values. PLoS Comput Biol…
Jupyter Notebook MIT License UpdatedJun 9, 2025 -
rancovr Public
rancovr: Cluster detection in R with RAndom Neighbourhood COVeRing
R MIT License UpdatedApr 7, 2025 -
cloning Public
Cloning algorithm for the computation of large deviation functions.
C++ MIT License UpdatedDec 7, 2024 -
dTASEP-fit Public
Software supporting M. Cavallaro et al. "Bayesian inference of polymerase dynamics over the exclusion process" (2021) arXiv/2109.05100
Python GNU General Public License v3.0 UpdatedMay 19, 2024 -
R scripts used in M Cavallaro, L Dyson, MJ Tildesly, D Todkill & MJ Keeling (2023) Spatio-temporal surveillance and early detection of SARS-CoV-2 variants of concern. J. R. Soc. Interface. 20: 2023…
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mcavallaro.github.io Public
Massimo's personal website
GNU General Public License v3.0 UpdatedSep 25, 2023 -
outbreak-detection Public
Software supporting M. Cavallaro, et al., Cluster detection with random neighbourhood covering: Application to invasive Group A Streptococcal disease. PLoS Comput Biol 18(11): e1010726 (2022) https…
R MIT License UpdatedMar 1, 2023 -
MonkeypoxUK Public
Forked from SamuelBrand1/MonkeypoxUKSome code for monkeypox
Julia MIT License UpdatedJan 30, 2023 -
ML4AMR Public
Software supporting M. Cavallaro, et al., Informing antimicrobial stewardship with explainable AI. PLOS Digit Health 2(1): e0000162 (2023) https://doi.org/10.1371/journal.pdig.0000162
Jupyter Notebook MIT License UpdatedAug 4, 2022 -
A game theoretic approach to explain the output of any machine learning model.
Jupyter Notebook MIT License UpdatedJun 16, 2022 -
gLoop Public
Software supporting M. Cavallaro, et al., 3′-5′ crosstalk contributes to transcriptional bursting. Genome Biol 22, 56 (2021). https://doi.org/10.1186/s13059-020-02227-5
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TV-PRO-seq Public
Forked from Jiezhangwarwick/TV-PRO-seqscripts for TV-PRO-seq
Perl UpdatedJul 20, 2020 -
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pymc Public
Forked from pymc-devs/pymc2PyMC: Bayesian Stochastic Modelling in Python (for PyMC3: https://github.com/pymc-devs/pymc3)
Fortran Other UpdatedJan 31, 2018 -
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Bookletise Public
The smartest way to page a pdf file for booklets.
Python GNU General Public License v2.0 UpdatedSep 17, 2017 -
Inverse-Laplace-transform Public
C link to FORTRAN 77 routine 662 for the inversion of Laplace transforms
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pymc3 Public
Forked from pymc-devs/pymcProbabilistic Programming in Python: Bayesian Modeling and Probabilistic Machine Learning with Theano
Python Other UpdatedAug 20, 2017 -
BasicCpp Public
Forked from a-cellofan/BasicCppBasic course in C/C++
C++ GNU General Public License v2.0 UpdatedJun 25, 2015 -
zeroclickinfo-goodies Public
Forked from duckduckgo/zeroclickinfo-goodiesDuckDuckGo instant answer plugins based on Perl functions
Perl Apache License 2.0 UpdatedApr 18, 2015 -
zeroclickinfo-spice Public
Forked from duckduckgo/zeroclickinfo-spiceDuckDuckGo instant answer plugins based on JavaScript APIs
JavaScript Apache License 2.0 UpdatedFeb 18, 2015
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