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inDrops_nf Public
Analysis pipeline built with Python and Nextflow for droplet-based single-cell transcriptomics using inDrops v3 chemistry
Jupyter Notebook UpdatedSep 22, 2025 -
nanoranger Public
simplified cellranger for long-read data
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LR_colocalization Public
Permutation testing on ligand-receptor coexpression on spatial data
Jupyter Notebook UpdatedJan 31, 2025 -
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SMaHT_SpatialDNA Public
Jupyter notebook for cell by variant matrix generation and spatial integration
Jupyter Notebook UpdatedOct 1, 2024 -
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rust-fundamentals Public
Forked from alfredodeza/rust-fundamentalsRust Bootcamp Week 2: Rust fundamentals
UpdatedMay 30, 2024 -
fastq_tools Public
A multi-language benchmarking project to explore limits of languages vs disk I/O
Java UpdatedMay 15, 2024 -
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align_unmapped Public
Quantification of unmapped (viral, microbial) reads obtained from high-throughput barcoded libraries such as 10x Genomics
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git-scm.com Public
Forked from git/git-scm.comThe git-scm.com website. Note that this repository is only for the website; issues with git itself should go to https://git-scm.com/community.
Ruby MIT License UpdatedFeb 6, 2023 -
library Public
Forked from bimberlabinternal/libraryReference V, D, J, C genes
Shell Creative Commons Attribution 4.0 International UpdatedMay 24, 2022 -
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telescope Public
Forked from mlbendall/telescopeQuantification of transposable element expression using RNA-seq
Python MIT License UpdatedAug 26, 2021 -
pychopper Public
Forked from nanoporetech/pychopperA tool to identify, orient, trim and rescue full length cDNA reads
Python Other UpdatedAug 15, 2021 -
EM-CNN Public
Deep learning pipeline for classification of histopathology images
Python UpdatedMay 26, 2021 -
ims-to-tif-converter Public
Forked from OakesLab/ims-to-tif-converterConverts Fusion IMS files to TIF files
Python UpdatedAug 15, 2018 -
BayesMadeSimple Public
Forked from AllenDowney/BayesMadeSimpleCode for a tutorial on Bayesian Statistics by Allen Downey.
Jupyter Notebook UpdatedMay 31, 2018 -
knn-smoothing Public
Forked from yanailab/knn-smoothingK-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data
Python UpdatedApr 26, 2018 -
pyexample Public
Forked from shuds13/pyexampleA exampe Python repository for scientific software
Python BSD 2-Clause "Simplified" License UpdatedFeb 24, 2018
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