Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
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May 31, 2026 - C++
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pacbio
Here are 165 public repositories matching this topic...
Structural variation caller using third generation sequencing
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Sep 10, 2026 - Python
Fast and accurate de novo assembler for long reads
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May 10, 2024 - C
Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling
deep-learning nanopore genomics computational-biology pacbio variant-calling illumina long-reads variant-detection ont-data ont-models
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Sep 15, 2026 - Python
NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations
docker mapper next-generation-sequencing alignment long-read pacbio bioconda oxford-nanopore structural-variations
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Mar 18, 2024 - C++
Amplicon sequencing analysis workflow using DADA2 and QIIME2
workflow pipeline nextflow metagenomics pacbio edna microbiome iontorrent illumina metabarcoding 16s rrna its 18s taxonomic-classification amplicon-sequencing qiime2 nf-core taxonomic-profiling metataxonomics
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Sep 22, 2026 - Nextflow
A universal toolkit for upstream processing of long RNA reads
bioinformatics rna-seq nanopore ngs pacbio quantification transcriptome transcriptomics isoforms long-reads fusion-genes polyadenylation
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Sep 18, 2026 - Python
A high performance and compression ratio compressor for genomic data, powered by GTXLab of Genetalks.
gene compression nanopore sam pacbio compress bam fastq genomic-data-compression compression-rate fastq-compression gtx
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Apr 18, 2022
Technology agnostic long read analysis pipeline for transcriptomes
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Jan 25, 2024 - Python
Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics
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Apr 17, 2026 - Python
CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)
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Mar 18, 2024
ClairS: a deep-learning method for long-read tumor–normal pair somatic small variant calling
bioinformatics deep-learning nanopore genomics somatic-variants haplotypes pacbio somatic-mutations illumina indels phasing snvs long-reads ont long-read-sequencing short-reads
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Sep 11, 2026 - Python
ClairS-TO - a deep-learning method for tumor-only somatic variant calling
bioinformatics deep-learning nanopore genomics somatic-variants variants pacbio variant-calling somatic-mutations illumina snvs long-reads ont long-read-sequencing tumors tumor-only
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Sep 9, 2026 - Python
An accurate and ultra-fast hybrid genome assembler
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Apr 10, 2024 - Perl
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