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@microbiomedata

National Microbiome Data Collaborative

National Microbiome Data Collaborative

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  1. nmdc-schema nmdc-schema Public

    National Microbiome Data Collaborative (NMDC) unified data model

    Python 44 10

  2. docs docs Public

    User-facing, web-based documentation about the NMDC

    Dockerfile 2 4

Repositories

Showing 10 of 81 repositories
  • nmdc-metadata-suggestor-ai-tool Public

    A repository to that holds the code for the NMDC Submission portal metadata suggestor tool, powered by AI

    microbiomedata/nmdc-metadata-suggestor-ai-tool’s past year of commit activity
    Makefile 1 1 0 2 Updated Feb 17, 2026
  • nmdc-runtime Public

    Runtime system for NMDC data management and orchestration

    microbiomedata/nmdc-runtime’s past year of commit activity
    Python 7 7 131 (3 issues need help) 8 Updated Feb 17, 2026
  • nmdc_notebooks Public

    Jupyter Notebooks demonstrating R and Python-based access to NMDC metadata and data

    microbiomedata/nmdc_notebooks’s past year of commit activity
    Jupyter Notebook 7 CC0-1.0 1 6 2 Updated Feb 16, 2026
  • submission-schema Public

    The NMDC submission schema

    microbiomedata/submission-schema’s past year of commit activity
    Python 1 MIT 4 25 3 Updated Feb 16, 2026
  • geoloc-tools Public

    Library to request information about a location regarding the elevation, soil type, and landuse

    microbiomedata/geoloc-tools’s past year of commit activity
    Python 1 1 0 1 Updated Feb 16, 2026
  • nmdc-orcid-creditor Public

    Web app NMDC team members use to credit ambassadors and champions via ORCID

    microbiomedata/nmdc-orcid-creditor’s past year of commit activity
    Python 1 1 5 (1 issue needs help) 0 Updated Feb 15, 2026
  • nmdc-server Public

    Data portal client and server for NMDC.

    microbiomedata/nmdc-server’s past year of commit activity
    Python 12 1 118 23 Updated Feb 15, 2026
  • nmdc_automation Public

    Prototype automation

    microbiomedata/nmdc_automation’s past year of commit activity
    Python 2 3 57 9 Updated Feb 14, 2026
  • nmdc-schema Public

    National Microbiome Data Collaborative (NMDC) unified data model

    microbiomedata/nmdc-schema’s past year of commit activity
    Python 44 CC0-1.0 10 351 (4 issues need help) 17 Updated Feb 14, 2026
  • ReadbasedAnalysis Public

    The pipeline takes in sequencing files (single- or paired-end) and profiles them using multiple taxonomic classification tools

    microbiomedata/ReadbasedAnalysis’s past year of commit activity
    HTML 2 7 1 1 Updated Feb 13, 2026
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