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National Microbiome Data Collaborative

National Microbiome Data Collaborative

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  1. nmdc-schema nmdc-schema Public

    National Microbiome Data Collaborative (NMDC) unified data model

    Python 44 9

  2. docs docs Public

    User-facing, web-based documentation about the NMDC

    Dockerfile 2 3

Repositories

Showing 10 of 80 repositories
  • nmdc-server Public

    Data portal client and server for NMDC.

    microbiomedata/nmdc-server’s past year of commit activity
    Python 12 0 119 24 Updated Dec 22, 2025
  • nmdc-status-website Public

    Static web page(s) used to display messages during outages and other special events

    microbiomedata/nmdc-status-website’s past year of commit activity
    HTML 1 0 3 0 Updated Dec 20, 2025
  • docs Public

    User-facing, web-based documentation about the NMDC

    microbiomedata/docs’s past year of commit activity
    Dockerfile 2 3 37 2 Updated Dec 20, 2025
  • nmdc_mass_spectrometry_metadata_generation Public

    Mass spectrometry metadata generation

    microbiomedata/nmdc_mass_spectrometry_metadata_generation’s past year of commit activity
    Python 2 0 5 1 Updated Dec 19, 2025
  • nmdc_notebooks Public

    Jupyter Notebooks demonstrating R and Python-based access to NMDC metadata and data

    microbiomedata/nmdc_notebooks’s past year of commit activity
    Jupyter Notebook 7 CC0-1.0 0 5 0 Updated Dec 19, 2025
  • metadata-for-user-facility-template-transformations Public

    CLI tool to convert metadata submissions from the NMDC submission portal to user facility Excel templates

    microbiomedata/metadata-for-user-facility-template-transformations’s past year of commit activity
    Python 0 0 15 (1 issue needs help) 2 Updated Dec 18, 2025
  • nmdc_automation Public

    Prototype automation

    microbiomedata/nmdc_automation’s past year of commit activity
    Python 2 2 62 8 Updated Dec 18, 2025
  • nmdc-schema Public

    National Microbiome Data Collaborative (NMDC) unified data model

    microbiomedata/nmdc-schema’s past year of commit activity
    Python 44 CC0-1.0 9 356 (4 issues need help) 12 Updated Dec 18, 2025
  • nmdc-aggregator Public

    Scripts that periodically aggregate data related to KEGG search

    microbiomedata/nmdc-aggregator’s past year of commit activity
    Python 0 0 4 1 Updated Dec 17, 2025
  • nmdc_api_utilities Public

    A library designed to simplify various research tasks for users looking to leverage the NMDC (National Microbiome Data Collaborative) APIs. The library provides a collection of general-purpose functions that facilitate easy access, manipulation, and analysis of microbiome data.

    microbiomedata/nmdc_api_utilities’s past year of commit activity
    Python 4 0 3 1 Updated Dec 17, 2025
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