Stars
C library for high-throughput sequencing data formats
This project aims to create a crystal clear tutorial on a cryptic topic.
Manipulate and generate figures for trees in Newick format
Recovering genes from targeted sequence capture data
This contains the scripts to determine the sex of chicken from the WGS data. This requires an indexed bam file.
Download Google Books
Using singularity to create a near-identical uppmax environment (experimental)
How to use Conda and how to contribute to Bioconda
ShellCheck, a static analysis tool for shell scripts
MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics
Block-breaking game in vim 8.0
A Python library for phylogenetic scripting, simulation, data processing and manipulation.
PLAST is a fast, accurate and NGS scalable bank-to-bank sequence similarity search tool providing significant accelerations.
The second version of the Kraken taxonomic sequence classification system
A massively parallel tool for model selection and tree inference on thousands of genes
Command-line program to download videos from YouTube.com and other video sites
Software for aligning viewing and editing dna/aminoacid sequences, intuitive, fast and lightweight. Download and website:
A simple utility to dump the first sheet of a .xlsx file to stdout in TSV format
This is my configuration for Awesome v3.5.6 window manager
Instant Markdown previews from Vim
Perl scripts for manipulating output from phylogenetic MCMC software (MrBayes, BEAST, PhyloBayes, etc)