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Alignment viewer for linux terminal

Shell 129 8 Updated Sep 13, 2025

Create booklets from PDF files

Python 100 20 Updated Dec 29, 2023

Short guides for HPC issues

Shell 1 Updated Mar 4, 2025

Tames problematic filenames

C 439 24 Updated Feb 1, 2026

Command line tool for viewing Excel files

Python 3 Updated Jun 17, 2025

A console-based alignment viewer

Python 120 15 Updated Apr 21, 2026

C library for high-throughput sequencing data formats

C 921 465 Updated May 13, 2026

This project aims to create a crystal clear tutorial on a cryptic topic.

Makefile 695 33 Updated Sep 17, 2025

Manipulate and generate figures for trees in Newick format

C++ 22 1 Updated Jul 31, 2025

Recovering genes from targeted sequence capture data

Python 134 45 Updated Jan 9, 2026

Alignment-Based Sequence extraction

Python 15 5 Updated Feb 14, 2022

This contains the scripts to determine the sex of chicken from the WGS data. This requires an indexed bam file.

R 1 Updated Apr 17, 2024

Download Google Books

JavaScript 213 49 Updated Dec 30, 2024

Analysis of Phylogenetics and Evolution

R 74 12 Updated Apr 17, 2026

Using singularity to create a near-identical uppmax environment (experimental)

Singularity 8 2 Updated Nov 27, 2023

How to use Conda and how to contribute to Bioconda

CSS 2 1 Updated Apr 11, 2023

ShellCheck, a static analysis tool for shell scripts

Haskell 39,423 1,914 Updated Apr 4, 2026

MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics

C 206 25 Updated Aug 25, 2025

Block-breaking game in vim 8.0

Vim Script 1,637 47 Updated Aug 29, 2018

A Python library for phylogenetic scripting, simulation, data processing and manipulation.

Python 234 58 Updated May 12, 2026

Convert GPS coordinates

R 1 1 Updated Aug 25, 2022

PLAST is a fast, accurate and NGS scalable bank-to-bank sequence similarity search tool providing significant accelerations.

C++ 9 2 Updated Dec 5, 2020

The second version of the Kraken taxonomic sequence classification system

C++ 903 306 Updated May 14, 2026

A massively parallel tool for model selection and tree inference on thousands of genes

Python 51 5 Updated Mar 4, 2024

Command-line program to download videos from YouTube.com and other video sites

Python 140,287 10,661 Updated Feb 19, 2026

Software for aligning viewing and editing dna/aminoacid sequences, intuitive, fast and lightweight. Download and website:

Java 157 29 Updated Mar 10, 2026

A simple utility to dump the first sheet of a .xlsx file to stdout in TSV format

Python 1 1 Updated Apr 30, 2024

This is my configuration for Awesome v3.5.6 window manager

Lua 1 Updated Jul 28, 2018

R We There Yet?

HTML 32 15 Updated Mar 27, 2025

Phylogenetic analysis in R

R 213 41 Updated May 7, 2026
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