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Bam file - consolidate names per contig rather than per chunk

Status: Open.

#173 In ncsa/NEAT;

· joshfactorial opened on Oct 7, 2025

Fix VCF Headers

Status: Open.

#172 In ncsa/NEAT;

· joshfactorial opened on Oct 7, 2025

Parallel mode fails to generate golden VCF and misplaces FASTQ files

Status: Open.

Bug

#160 In ncsa/NEAT;

· alermol opened on Sep 12, 2025

unexpected behavior for BED file filtering combined with paired end reads.

bugSomething isn't workingSomething isn't working

Status: Open.

#152 In ncsa/NEAT;

· huguesrichard opened on Jul 7, 2025

Mutation rate question

Status: Open.

#151 In ncsa/NEAT;

· mattbird567 opened on May 14, 2025

read-simulator hangs before writing file

Status: Open.

#148 In ncsa/NEAT;

· abbyevewilliams opened on Apr 1, 2025

variants tests

Status: Open.

#133 In ncsa/NEAT;

· joshfactorial opened on Nov 21, 2024

Error with reference when running NEAT

bugSomething isn't workingSomething isn't working

Status: Open.

#132 In ncsa/NEAT;

· yaroslovakia opened on Nov 18, 2024

Error when generating variants where there is a degenerate symbol in the reference

enhancementNew feature or requestNew feature or request

Status: Open.

#122 In ncsa/NEAT;

· dani-ture opened on Jul 11, 2024