🕷️ An adaptive Web Scraping framework that handles everything from a single request to a full-scale crawl!

What the f*ck Python? 😱

A bidirectional Markdown to HTML to Markdown converter written in Javascript

⚠️ This project is not maintained anymore! Please go to https://github.com/visjs

Lossy PNG compressor — pngquant command based on libimagequant library

Official git repository for Biopython (originally converted from CVS)

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

A DSL for data-driven computational pipelines

Python 3.9 to JavaScript compiler - Lean, fast, open!

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

RNA-seq aligner

Toolkit for processing sequences in FASTA/Q formats

RNAseq analysis notes from Ming Tang

Near-optimal RNA-Seq quantification

Gene Set Enrichment Analysis in Python

Python Wrapper for NVD3 - It's time for beautiful charts

A tool to find sequencing data and metadata from public databases.

Quickly search, compare, and analyze genomic and metagenomic data sets.

A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methods

A fast multi-threaded k-mer counter

Raw nanopore signal mapper that enables real-time targeted sequencing

a set of SKILLS.md for doing bioinformatics with agents like claude code

Fast genome and metagenome distance estimation using MinHash

Fast Gene Set Enrichment Analysis

Short read de novo assembler using de Bruijn graphs, as published in: D.R. Zerbino and E. Birney. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Research, 1…

Pairwise Sequence Alignment Library

An ultrafast memory-efficient short read aligner

R package for modeling single cell UMI expression data using regularized negative binomial regression

Example Python code for comparing documents using MinHash