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Nextstrain

Real-time tracking of pathogen evolution

236 followers
https://nextstrain.org
@nextstrain
@nextstrain@mstdn.science

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ncov ncov Public

Nextstrain build for SARS-CoV-2

Python 1.4k 408
augur augur Public

Pipeline components for real-time phylodynamic analysis

Python 279 137
auspice auspice Public

Web app for visualizing pathogen evolution

JavaScript 312 172

Repositories

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Showing 10 of 104 repositories

augur Public
Pipeline components for real-time phylodynamic analysis

nextstrain/augur's past year of commit activity

Python 279 AGPL-3.0 137 230 (1 issue needs help) 39 Updated Sep 22, 2026
chikv Public
Chikungunya virus workflows

nextstrain/chikv's past year of commit activity

Python 1 0 0 0 Updated Sep 22, 2026
zika Public
Nextstrain build for Zika virus

nextstrain/zika's past year of commit activity

Python 12 11 5 2 Updated Sep 22, 2026
oropouche Public
Oropouche Nextstrain build

nextstrain/oropouche's past year of commit activity

Python 2 2 0 0 Updated Sep 22, 2026
rubella Public
Nextstrain build for rubella virus

nextstrain/rubella's past year of commit activity

Python 2 2 3 2 Updated Sep 22, 2026
yellow-fever Public

nextstrain/yellow-fever's past year of commit activity

Python 2 5 1 0 Updated Sep 22, 2026
hantavirus Public
repository for workflows for various orthohantavirus builds

nextstrain/hantavirus's past year of commit activity

Python 0 0 0 0 Updated Sep 22, 2026
dengue Public
Nextstrain build for dengue virus

nextstrain/dengue's past year of commit activity

Python 17 13 18 (1 issue needs help) 1 Updated Sep 22, 2026
newcastle-disease-virus Public

nextstrain/newcastle-disease-virus's past year of commit activity

Python 0 0 0 0 Updated Sep 22, 2026
avian-flu Public
Nextstrain build for avian influenza viruses

nextstrain/avian-flu's past year of commit activity

Python 29 11 18 5 Updated Sep 22, 2026

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Python JavaScript Shell TypeScript C

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nextstrain pathogen sars-cov-2 clades ncov

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