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fix: sort GTDB-Tk input bins - #1078

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dialvarezs merged 2 commits into
nf-core:devfrom
dialvarezs:fix/gtdbtk-sort-bins
Jul 21, 2026
Merged

fix: sort GTDB-Tk input bins#1078
dialvarezs merged 2 commits into
nf-core:devfrom
dialvarezs:fix/gtdbtk-sort-bins

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@dialvarezs

@dialvarezs dialvarezs commented Jul 21, 2026

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One of the GTDB-Tk tsv output fails checksum sometimes, this should cover it.

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/mag branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core pipelines lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

@dialvarezs dialvarezs changed the title fix: sort gtdb-tk input bins fix: sort GTDB-Tk input bins Jul 21, 2026
@dialvarezs
dialvarezs merged commit 25527e2 into nf-core:dev Jul 21, 2026
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2 participants