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Important! Template update for nf-core/tools v4.0.3 - #1080

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dialvarezs merged 5 commits into
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nf-core-template-merge-4.0.3
Jul 25, 2026
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Important! Template update for nf-core/tools v4.0.3#1080
dialvarezs merged 5 commits into
devfrom
nf-core-template-merge-4.0.3

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@nf-core-bot

@nf-core-bot nf-core-bot commented Jul 24, 2026

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Version 4.0.3 of nf-core/tools has just been released with updates to the nf-core template. For more details, check out the blog post: https://nf-co.re/advisories/pr-comment-workflow-vulnerability

Please make sure to merge this pull-request as soon as possible, resolving any merge conflicts in the nf-core-template-merge-4.0.3 branch (or your own fork, if you prefer). Once complete, make a new minor release of your pipeline.

For instructions on how to merge this PR, please see the template sync documentation.

For more information about this release of nf-core/tools, please see the v4.0.3 release page.

Note

Since nf-core/tools 3.5.0, older template update PRs will not be automatically closed, but will remain open in your pipeline repository. Older template PRs will be automatically closed once a newer template PR has been merged.

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github-actions Bot commented Jul 24, 2026 •
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nf-core pipelines lint overall result: Passed ✅

Posted for pipeline commit f42f7ba

+| ✅ 396 tests passed       |+
#| ❔   1 tests were ignored |#
Details

❔ Tests ignored:

  • files_unchanged - File ignored due to lint config: .github/PULL_REQUEST_TEMPLATE.md

✅ Tests passed:

Run details

  • nf-core/tools version 4.0.3
  • Run at 2026-07-25 07:18:02

@dialvarezs
dialvarezs changed the base branch from dev to main July 25, 2026 07:25
@dialvarezs
dialvarezs changed the base branch from main to dev July 25, 2026 07:26
jfy133
jfy133 approved these changes Jul 25, 2026
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@jfy133 jfy133 left a comment

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LGTM!

@dialvarezs
dialvarezs merged commit 8e1a178 into dev Jul 25, 2026
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@jfy133
jfy133 deleted the nf-core-template-merge-4.0.3 branch July 25, 2026 08:01
@dialvarezs dialvarezs mentioned this pull request Jul 25, 2026
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@jfy133 jfy133 jfy133 approved these changes
@d4straub d4straub Awaiting requested review from d4straub d4straub is a code owner
@prototaxites prototaxites Awaiting requested review from prototaxites prototaxites is a code owner
@muabnezor muabnezor Awaiting requested review from muabnezor muabnezor is a code owner
@dialvarezs dialvarezs Awaiting requested review from dialvarezs dialvarezs is a code owner

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