nf-test: default config - #830
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…o speed up run time
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@nf-core-bot fix linting |
JoseEspinosa
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Jun 18, 2025
JoseEspinosa
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LGTM! Just some small suggestions but only formatting issues and a possible tyop, so feel free to merge once you go throw them
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| // // stable_name: All files + folders in ${params.outdir}/ with a stable name | ||
| // def stable_name = getAllFilesFromDir(params.outdir, relative: true, includeDir: true, ignore: ['pipeline_info/*.{html,json,txt}']) | ||
| // // stable_path: All files in ${params.outdir}/ with stable content |
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| // // stable_name: All files + folders in ${params.outdir}/ with a stable name | |
| // def stable_name = getAllFilesFromDir(params.outdir, relative: true, includeDir: true, ignore: ['pipeline_info/*.{html,json,txt}']) | |
| // // stable_path: All files in ${params.outdir}/ with stable content | |
| // stable_name: All files + folders in ${params.outdir}/ with a stable name | |
| // def stable_name = getAllFilesFromDir(params.outdir, relative: true, includeDir: true, ignore: ['pipeline_info/*.{html,json,txt}']) | |
| // stable_path: All files in ${params.outdir}/ with stable content |
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| // // All stable path name, with a relative path | ||
| // stable_name, | ||
| // // All files with stable contents | ||
| // stable_path |
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| // // All stable path name, with a relative path | |
| // stable_name, | |
| // // All files with stable contents | |
| // stable_path | |
| // All stable path name, with a relative path | |
| // stable_name, | |
| // All files with stable contents | |
| // stable_path |
| mode: params.publish_dir_mode, | ||
| pattern: "*.{bam,bai}", | ||
| enabled: params.save_assembly_mapped_reads | ||
| enabled: params.save_assembly_mapped_reads, |
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Is the comma here needed?
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| enabled: params.save_assembly_mapped_reads, | |
| enabled: params.save_assembly_mapped_reads |
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I asked on slack and seems that the nxf server likes it, I don't... 😄
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I'm going to rudely ignore the suggestions and go blindly with the approval 😆 Context:
But I appreciate the ✔️ ! |
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PR checklist
nf-core pipelines lint).nextflow run . -profile test,docker --outdir <OUTDIR>).nextflow run . -profile debug,test,docker --outdir <OUTDIR>).docs/usage.mdis updated.docs/output.mdis updated.CHANGELOG.mdis updated.README.mdis updated (including new tool citations and authors/contributors).