Skip to content

add missing lint test documentation and add pre-commit check for them - #4052

Merged
mashehu merged 4 commits into
nf-core:devfrom
mashehu:add-missing-linting-docs
Apr 1, 2026
Merged

add missing lint test documentation and add pre-commit check for them#4052
mashehu merged 4 commits into
nf-core:devfrom
mashehu:add-missing-linting-docs

Conversation

@mashehu

@mashehu mashehu commented Feb 18, 2026

Copy link
Copy Markdown
Contributor

No description provided.

@mashehu
mashehu requested a review from mirpedrol February 18, 2026 19:23
@codecov

codecov Bot commented Feb 18, 2026

Copy link
Copy Markdown

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 78.45%. Comparing base (0345e8b) to head (fc818ee).
⚠️ Report is 1 commits behind head on dev.

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

🚀 New features to boost your workflow:
  • ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.

@mashehu mashehu added this to the 4.0.0 milestone Mar 31, 2026

@JulianFlesch JulianFlesch left a comment

Copy link
Copy Markdown
Contributor

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Looking good. But some of these new checks are failing if run on our existing linting functionality.
For example:

tools/nf_core/modules/lint/module_changes.py:67: 'check_local_copy' used in module_changes() but not documented in its docstring

We can fix these also later, when the linting tests are changed

@mashehu
mashehu merged commit 7feb0a2 into nf-core:dev Apr 1, 2026
112 checks passed
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants