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update modules and subworkflows in template#4077

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mashehu merged 12 commits into
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update-template-components
Mar 5, 2026
Merged

update modules and subworkflows in template#4077
mashehu merged 12 commits into
devfrom
update-template-components

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@mashehu

@mashehu mashehu commented Mar 4, 2026

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Closes #4076

@mashehu mashehu requested a review from mirpedrol March 4, 2026 10:11
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codecov Bot commented Mar 4, 2026

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Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 78.39%. Comparing base (c2e6e22) to head (9cbbee1).
⚠️ Report is 4 commits behind head on dev.

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Comment thread nf_core/pipeline-template/workflows/pipeline.nf Outdated
Comment thread nf_core/pipeline-template/workflows/pipeline.nf Outdated
Comment thread nf_core/pipeline-template/workflows/pipeline.nf Outdated
Comment thread nf_core/pipeline-template/workflows/pipeline.nf Outdated
@mashehu

mashehu commented Mar 4, 2026

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@nf-core-bot update template snapshots

@mashehu mashehu force-pushed the update-template-components branch from becf46b to 21d57c3 Compare March 4, 2026 12:02
@mashehu

mashehu commented Mar 4, 2026

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@nf-core-bot update template snapshots

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@mashehu

mashehu commented Mar 5, 2026

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@nf-core-bot update template snapshots

@mashehu mashehu force-pushed the update-template-components branch from b2a7710 to 21d57c3 Compare March 5, 2026 11:24
@mashehu mashehu force-pushed the update-template-components branch from 5ebfb59 to 9cbbee1 Compare March 5, 2026 12:06
pinin4fjords added a commit to nf-core/riboseq that referenced this pull request Mar 5, 2026
Adapt to the updated multiqc module that takes a single tuple input
(meta, files, config, logo, replace_names, sample_names) following
the pattern from nf-core/tools#4077.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

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🚀

@mashehu mashehu merged commit bb6b05b into dev Mar 5, 2026
112 checks passed
@mashehu mashehu deleted the update-template-components branch March 5, 2026 12:46
mashehu added a commit to mashehu/tools that referenced this pull request Mar 25, 2026
Co-authored-by: nf-core-bot <core@nf-co.re>
Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com>
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5 participants