Add CI tests to test running a pipeline when it's created from a template#2334

Merged

mirpedrol merged 28 commits into

nf-core:devfrom

mirpedrol:different-template-tests

Jun 26, 2023

Commits on Jun 21, 2023

Add CI tests to test running a pipeline whe it's created from a template skipping different areas
mirpedrol
committed
avoid writing tabs in template files
mirpedrol
committed
add yml files to artifacts for debugging
mirpedrol
committed

Commits on Jun 22, 2023

Fix #2332

drpatelh
authored and
mirpedrol
committed
Add in call to getGenomeAttribute

drpatelh
authored and
mirpedrol
committed
Add missing brace

drpatelh
authored and
mirpedrol
committed
Set fasta as default in nextflow.config if not using igenomes

drpatelh
authored and
mirpedrol
committed
Fix spacing with jinja

drpatelh
authored and
mirpedrol
committed
Fix spacing with jinja

drpatelh
authored and
mirpedrol
committed
Fix ECLint

drpatelh
authored and
mirpedrol
committed
Update CHANGELOG

drpatelh
authored and
mirpedrol
committed
don't pin nf-validation version
mirpedrol
committed
run with last Nextflow version
mirpedrol
committed
add linting of pipelines from different templates
mirpedrol
committed
Merge branch 'dev' into different-template-tests
mirpedrol
authored
use prefix without hyphen - should fix nf-core sync
mirpedrol
committed
don't change the prefix, instead run nf-core sync using a template
mirpedrol
committed
only run different templates CI if pipeline-template files are modified
mirpedrol
committed
add quotes to path filter. does it work now?
mirpedrol
committed
remove results folder before linting the pipeline & fix trailing spaces
mirpedrol
committed
Merge branch 'dev' into different-template-tests
mirpedrol
authored
run nf-core sync with verbose
mirpedrol
committed
raise sync exception for debugging
mirpedrol
committed
fix reading template areas to skip as a string when an array is not provided
mirpedrol
committed
try fixing trailing spaces
mirpedrol
committed
try fixing trailing spaces error
mirpedrol
committed
don't fail ignored
mirpedrol
committed
ignore conf/igenomes.config if the pipeline is created without igenomes
mirpedrol
committed

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Add CI tests to test running a pipeline when it's created from a template#2334

Add CI tests to test running a pipeline when it's created from a template#2334
mirpedrol merged 28 commits into
nf-core:devfrom
mirpedrol:different-template-tests

Commits on Jun 21, 2023

Add CI tests to test running a pipeline whe it's created from a template skipping different areas

avoid writing tabs in template files

add yml files to artifacts for debugging

Commits on Jun 22, 2023

Fix #2332

Add in call to getGenomeAttribute

Add missing brace

Set fasta as default in nextflow.config if not using igenomes

Fix spacing with jinja

Fix spacing with jinja

Fix ECLint

Update CHANGELOG

don't pin nf-validation version

run with last Nextflow version

add linting of pipelines from different templates

Merge branch 'dev' into different-template-tests

use prefix without hyphen - should fix nf-core sync

don't change the prefix, instead run nf-core sync using a template

only run different templates CI if pipeline-template files are modified

add quotes to path filter. does it work now?

remove results folder before linting the pipeline & fix trailing spaces

Merge branch 'dev' into different-template-tests

run nf-core sync with verbose

raise sync exception for debugging

fix reading template areas to skip as a string when an array is not provided

try fixing trailing spaces

try fixing trailing spaces error

don't fail ignored

ignore conf/igenomes.config if the pipeline is created without igenomes