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Stan model improvements from SISMID - #585

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seabbs merged 6 commits into
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stan-improvements-579
Dec 2, 2025
Merged

Stan model improvements from SISMID#585
seabbs merged 6 commits into
mainfrom
stan-improvements-579

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@sbfnk

@sbfnk sbfnk commented Dec 2, 2025

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Summary

  • Allow zero-day delays in censored-delay-model
  • Restructure forecast model for efficiency (forecast in generated quantities only)
  • Add forecasting capability to joint-nowcast-with-r model
  • Adjust priors in joint-nowcast model
  • Fix missing newlines at EOF in Stan functions

Closes #579

sbfnk and others added 5 commits December 2, 2025 12:11
Co-Authored-By: sbfnk-bot <242615673+sbfnk-bot@users.noreply.github.com>
Co-Authored-By: sbfnk-bot <242615673+sbfnk-bot@users.noreply.github.com>
Co-Authored-By: sbfnk-bot <242615673+sbfnk-bot@users.noreply.github.com>
Co-Authored-By: sbfnk-bot <242615673+sbfnk-bot@users.noreply.github.com>
Co-Authored-By: sbfnk-bot <242615673+sbfnk-bot@users.noreply.github.com>
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sbfnk marked this pull request as draft December 2, 2025 12:14
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sbfnk marked this pull request as ready for review December 2, 2025 15:35
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sbfnk requested a review from seabbs December 2, 2025 15:36

@seabbs seabbs left a comment

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LGTM

@seabbs
seabbs enabled auto-merge December 2, 2025 16:15
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seabbs added this pull request to the merge queue Dec 2, 2025
Merged via the queue into main with commit 1ba7a1e Dec 2, 2025
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@seabbs
seabbs deleted the stan-improvements-579 branch December 2, 2025 16:26
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Bring in stan code changes from SISMID

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