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@samtools @conda-forge @fulcrumgenomics @bioconda @nf-core @conda-incubator

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7 stars written in Java
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Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

Java 728 405 Updated Apr 15, 2026

RTG Tools: Utilities for accurate VCF comparison and manipulation

Java 335 52 Updated May 27, 2025

Official code repository for GATK versions 1.0 through 3.7 (core engine). For GATK 4 code, see the https://github.com/broadinstitute/gatk repository

Java 299 223 Updated Aug 22, 2018

GATK Official Release Repository

Java 1 Updated Dec 3, 2018
Java 1 Updated Mar 16, 2016

Integrative Genomics Viewer. This is a mirror of the main repository (code.google.com/p/igv), being used for testing purposes only.

Java 1 Updated May 24, 2012

Reference-based compression of SRA data

Java 1 Updated Mar 3, 2012