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anadama2 Public
Forked from biobakery/anadama2AnADAMA2 is the next generation of AnADAMA (Another Automated Data Analysis Management Application). AnADAMA is a tool to capture your workflow and execute it efficiently on your local machine or i…
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EzClermont Public
Phylotype your strains using Clermont's 2013 method: ezclermont.org
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MetaPhlAn Public
Forked from biobakery/MetaPhlAnMetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data
Python MIT License UpdatedApr 18, 2022 -
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mkdocs Public
Forked from mkdocs/mkdocsProject documentation with Markdown.
Python BSD 2-Clause "Simplified" License UpdatedMar 31, 2022 -
mkdocs-sample Public
Forked from yriahi/mkdocs-sampleA sample documentation site generated from Markdown.
UpdatedMar 12, 2022 -
dada2 Public
Forked from tengfei-emory/dada2Accurate sample inference from amplicon data with single nucleotide resolution
R GNU Lesser General Public License v3.0 UpdatedDec 10, 2021 -
Comparison_of_DA_microbiome_methods Public
Forked from nearinj/Comparison_of_DA_microbiome_methodsR GNU General Public License v3.0 UpdatedDec 9, 2021 -
corncob Public
Forked from statdivlab/corncobCount Regression for Correlated Observations with the Beta-binomial
R UpdatedOct 19, 2021 -
Maaslin2 Public
Forked from biobakery/Maaslin2MaAsLin2: Microbiome Multivariate Association with Linear Models
R Other UpdatedOct 16, 2021 -
cgfind Public
Minimal way to find and download complete prokaryotic genomes
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BenchmarkMicrobiome Public
Forked from himelmallick/BenchmarkMicrobiomeLarge-scale Benchmarking of Microbial Multivariable Association Methods
R MIT License UpdatedFeb 2, 2021 -
annofilt Public
Filter Prokka assemblies for pangenome analysis
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riboSeed Public
pipeline for using ribosomal flanking regions to improve bacterial genome assembly
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happie Public
Horizontally Aquired Partial Pangenome of Inserted Elements
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AMPHORA2 Public
Forked from wu-lab-uva/AMPHORA2An Automated Phylogenomic Inference Pipeline for Bacterial and Archaeal Sequences.
Pep8 UpdatedFeb 7, 2020 -
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blobtools Public
Forked from DRL/blobtoolsModular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
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curveball Public
Forked from yoavram/curveballPredicting microbial growth in a mixed culture from growth curve data
Python Other UpdatedDec 3, 2019 -
EToKi Public
Forked from zheminzhou/EToKiall methods related to Enterobase
Java GNU General Public License v3.0 UpdatedNov 1, 2019 -
sraFind Public
Get SRA accessions from nucleotide accessions, assuming the authors did the right thing and made the data available
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plentyofbugs Public
Find your sequenced isolate an compatable reference genome based on location, interests, and average nucleotide identity
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ptformat Public
Forked from zamaudio/ptformatFree software file format parser for Avid ProTools sessions
C++ GNU Lesser General Public License v2.1 UpdatedAug 23, 2019 -
CheckM Public
Forked from Ecogenomics/CheckMAssess the quality of microbial genomes recovered from isolates, single cells, and metagenomes
Python GNU General Public License v3.0 UpdatedJul 24, 2019
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