Stars
sunburst plots for taxonomy - working to update Krona
Nextflow runs monitoring and organisation UI
A repository for hosting Nextflow DSL2 module files containing tool-specific process definitions and their associated documentation for MSKCC
Blazing-Fast Bioinformatic Operations on Python DataFrames
Code generation tool, creates python / C programs that parse command line arguments. Say bye to starting each project by reading "argparse" / "geptopt.h" docs.
R package for fetching and parsing data of the Human Microbiome Compendium
A bioinformatics tool for analyzing Bifidobacteria in sequencing data.
Metagenomic Estimation of Dietary Intake and Content.
📐 Jekyll theme for building a personal site, blog, project documentation, or portfolio.
I'm building what might be the smallest #opensource #spectrometer with an easy to use UI! I call it a pocket spectrometer. Combining #M5StickC (~$20) with AS7341 sensor (~$17.5). My goal? A complet…
MaAsLin3: Microbiome Multivariate Association with Linear Models
R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.
Type strain identification for 16S reads
Check your mock communities from microbiome sequencing experiments
alignment-free coverage calculation for metagenomic binning >100 times faster
A Snakemake executor plugin for submitting jobs to a LSF cluster
A terminal workspace with batteries included
Convert GTDB taxonomy to NCBI taxdump format
Benchmarking adapter and quality trimming tools
RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches
Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.
A fast lossless FASTQ compressor with ultra-high compression ratio
Distribute and run LLMs with a single file.