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This is the development home of the workflow management system Snakemake. For general information, see

Python 2,628 614 Updated Nov 7, 2025

A repository for hosting Nextflow DSL2 module files containing tool-specific process definitions and their associated documentation for MSKCC

Python 11 6 Updated Nov 7, 2025

Specification for the Workflow Description Language (WDL).

835 313 Updated Nov 6, 2025
Nextflow 3 1 Updated Nov 6, 2025

PaSh: Light-touch Data-Parallel Shell Processing

Shell 582 45 Updated Nov 6, 2025

Metadata ingest service

Python 8 Updated Nov 6, 2025
R 58 10 Updated Nov 6, 2025

Find, verify, and analyze leaked credentials

Go 23,101 2,128 Updated Nov 6, 2025

WtP: Phage identification via nextflow and docker or singularity

Nextflow 105 15 Updated Nov 6, 2025

MaAsLin3: Microbiome Multivariate Association with Linear Models

R 49 8 Updated Nov 6, 2025

An easy-to-deploy containerized Foundry Virtual Tabletop server.

Shell 782 137 Updated Nov 6, 2025

The open source framework for sample based instruments

C++ 1,285 146 Updated Nov 5, 2025

Distribute and run LLMs with a single file.

C 23,342 1,234 Updated Nov 5, 2025

一个用于在 macOS 上平滑你的鼠标滚动效果或单独设置滚动方向的小工具, 让你的滚轮爽如触控板 | A lightweight tool used to smooth scrolling and set scroll direction independently for your mouse on macOS

Swift 17,798 570 Updated Nov 5, 2025

R markdown documents copied from other folders on Dec 15th 2021

Python 14 2 Updated Nov 4, 2025

Synthesizer plug-in (previously released as Vember Audio Surge)

C 3,533 431 Updated Nov 3, 2025

Accurate, resource-frugal and deterministic DNA sequence classifier.

Python 36 5 Updated Nov 1, 2025

Run your GitHub Actions locally 🚀

Go 66,841 1,772 Updated Nov 1, 2025

Blazing-Fast Bioinformatic Operations on Python DataFrames

Python 101 25 Updated Oct 31, 2025

A terminal workspace with batteries included

Rust 27,040 857 Updated Oct 31, 2025

Aggregate results from bioinformatics analyses across many samples into a single report.

JavaScript 1,387 639 Updated Oct 31, 2025

Run arbitrary commands when files change

C 5,345 119 Updated Oct 31, 2025

A grammar of graphics for comparative genomics

R 706 67 Updated Oct 31, 2025

MusicBeam is a multi plattform software to use a projector as a rgb laser.

Processing 282 50 Updated Oct 30, 2025

Beagle API Command Line Utility

Python 1 1 Updated Oct 29, 2025

Performant Pythonic GenomicRanges

Python 489 50 Updated Oct 28, 2025

A user-friendly workflow for phylogenomics

Shell 221 25 Updated Oct 25, 2025

Versatile open-source tool for microbiome analysis

C++ 722 129 Updated Oct 24, 2025

The R Installation Manager

Rust 827 31 Updated Oct 23, 2025

Read alignment statistics for metagenomics

Rust 377 35 Updated Oct 23, 2025
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