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funcprofiler Public
Read-based functional profiling of microbiome sequencing data
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nfcore-test-datasets Public
Forked from nf-core/test-datasetsTest data to be used for automated testing with the nf-core pipelines
MIT License UpdatedNov 4, 2025 -
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ampliseq Public
Forked from nf-core/ampliseqAmplicon sequencing analysis workflow using DADA2 and QIIME2
Nextflow MIT License UpdatedJul 4, 2025 -
micom-snakemake Public
A snakemake workflow for running MICOM https://micom-dev.github.io/micom/
Python MIT License UpdatedJun 3, 2025 -
memacs Public
my emacs config. clone this to your home dir, and rename it ".emacs.d"
Emacs Lisp UpdatedMay 22, 2025 -
valheim-server-docker-arm Public
Forked from lloesche/valheim-server-dockerValheim dedicated gameserver with automatic update, World backup, BepInEx and ValheimPlus mod support
Shell Apache License 2.0 UpdatedMay 13, 2025 -
media Public
Forked from micom-dev/mediaEnvironmental growth media for MICOM.
Jupyter Notebook Apache License 2.0 UpdatedMay 12, 2025 -
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whvr Public
Lazy shiny app for aligning 16S primers or amplicons to the cannonical reference
R UpdatedDec 13, 2024 -
carveme Public
Forked from cdanielmachado/carvemeCarveMe: genome-scale metabolic model reconstruction
Python Other UpdatedDec 5, 2024 -
bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell MIT License UpdatedNov 27, 2024 -
micom Public
Forked from micom-dev/micomPython package to study microbial communities using metabolic modeling.
Python Apache License 2.0 UpdatedOct 9, 2024 -
LSF profile for Snakemake >= v8
MIT License UpdatedJan 30, 2024 -
shiny-phyloseq Public
Forked from joey711/shiny-phyloseqAn interactive web application for demonstrating and using phyloseq.
HTML GNU General Public License v3.0 UpdatedSep 26, 2023 -
hecatomb Public
Forked from shandley/hecatombhecatomb is a virome analysis pipeline for analysis of Illumina sequence data
Python MIT License UpdatedSep 7, 2023 -
spectra Public
Forked from dpeerlab/spectraSupervised Pathway DEConvolution of InTerpretable Gene ProgRAms
Jupyter Notebook MIT License UpdatedAug 8, 2023 -
boxr Public
Forked from r-box/boxr📦 A high-level R interface for the box.com API
R Other UpdatedJul 12, 2023 -
microclass Public
Forked from larssnip/microclassR package for microbial taxonomic classification
R UpdatedJun 1, 2023 -
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humann Public
Forked from biobakery/humannHUMAnN 3.0 is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).
Python Other UpdatedApr 17, 2023 -
KrakenTools Public
Forked from jenniferlu717/KrakenToolsKrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
Python GNU General Public License v3.0 UpdatedFeb 21, 2023 -
isabl_cli Public
Forked from papaemmelab/isabl_cli🤖 isabl Command Line Client and SDK.
Python Other UpdatedFeb 14, 2023 -
snakedeploy-issue Public
Forked from snakemake-workflows/dna-seq-varlociraptorPython MIT License UpdatedJan 31, 2023 -
metaerg Public
Forked from niccw/metaergfork for fixing issue #12 and #36
Perl UpdatedNov 15, 2022 -
jenkspy-feedstock Public
Forked from conda-forge/jenkspy-feedstockA conda-smithy repository for jenkspy.
BSD 3-Clause "New" or "Revised" License UpdatedNov 14, 2022 -
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rgi Public
Forked from arpcard/rgiResistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on homology and SNP models.
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