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@nipreps

NeuroImaging PREProcessing toolS

NiPreps (NeuroImaging PREProcessing toolS)

Please visit www.nipreps.org for a more comprehensive description of this community. Don't forget to also learn about the sister initiative www.templateflow.org.

News and some discussions take place at the Nipreps GitHub discussions.

About

The current neuroimaging workflow has matured into a large chain of processing and analysis steps involving a large number of experts, across imaging modalities and applications. The development and fast adoption of fMRIPrep have revealed that neuroscientists need tools that simplify their research workflow, provide visual reports and checkpoints, and engender trust in the tool itself. The NiPreps framework extends fMRIPrep's approach and principles to new imaging modalities. The vision for NiPreps is to provide end-users (i.e., researchers) with applications that allow them to perform quality control smoothly and to prepare their data for modeling and statistical analysis.

Acknowledgments

This work is steered and maintained by the NiPreps Community. The development of this framework is supported the NIMH (RF1MH121867, RAP, OE).

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  1. fmriprep fmriprep Public

    fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

    HTML 715 308

  2. dmriprep dmriprep Public

    dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

    Python 73 25

  3. smriprep smriprep Public

    Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)

    Python 162 47

  4. mriqc mriqc Public

    Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain

    Python 346 135

  5. petprep petprep Public

    PETPrep: A Robust Preprocessing Pipeline for PET Data

    Jupyter Notebook 20 13

Repositories

Showing 10 of 60 repositories
  • nibabies Public

    fMRIPrep Lifespan - A robust, transparent workflow tailored for neonate and infant MRI

    nipreps/nibabies’s past year of commit activity
    Python 39 Apache-2.0 15 35 7 Updated Feb 9, 2026
  • nifreeze Public

    A flexible framework for volume-wise artifact estimation and correction across multiple 4D neuroimaging modalities (diffusion MRI, functional MRI, and PET)

    nipreps/nifreeze’s past year of commit activity
    Python 5 Apache-2.0 7 37 (1 issue needs help) 18 Updated Feb 7, 2026
  • fmriprep Public

    fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

    nipreps/fmriprep’s past year of commit activity
    HTML 715 Apache-2.0 308 315 (24 issues need help) 13 Updated Feb 6, 2026
  • dmriprep Public

    dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

    nipreps/dmriprep’s past year of commit activity
    Python 73 Apache-2.0 25 18 0 Updated Feb 6, 2026
  • mriqcwebapi Public

    Backend of the MRIQC Web API

    nipreps/mriqcwebapi’s past year of commit activity
    Python 7 Apache-2.0 13 3 0 Updated Feb 2, 2026
  • acres Public

    Resource-loading utility for Python

    nipreps/acres’s past year of commit activity
    Python 0 Apache-2.0 1 0 0 Updated Feb 1, 2026
  • fmripost-phase Public

    An attempt at an fMRIPost workflow for handling phase data

    nipreps/fmripost-phase’s past year of commit activity
    Python 3 Apache-2.0 1 10 4 Updated Feb 1, 2026
  • fmripost-template Public template

    A generic fMRIPost workflow

    nipreps/fmripost-template’s past year of commit activity
    Python 0 Apache-2.0 4 6 4 Updated Feb 1, 2026
  • fmripost-aroma Public

    Run ICA-AROMA on fMRIPrep derivatives

    nipreps/fmripost-aroma’s past year of commit activity
    Python 22 Apache-2.0 5 21 3 Updated Feb 1, 2026
  • fmripost-rapidtide Public

    A BIDS App for running rapidtide on a preprocessed fMRI dataset.

    nipreps/fmripost-rapidtide’s past year of commit activity
    Python 4 Apache-2.0 1 13 4 Updated Feb 1, 2026

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