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bitnuc Public
A library for efficient nucleotide sequence manipulation using 2-bit encoding
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paraseq Public
A minimal copy fastq and fasta reader built for parallel support and paired end processing
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hist-rs Public
An efficient unique-line counter (25x over `sort | uniq -c`)
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ibu Public
a rust library for high throughput binary encoding of genomic sequences
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sgcount Public
A flexible and fast sgRNA counter from FASTQ Files
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sandbox.bio Public
Forked from sandbox-bio/sandbox.bioInteractive bioinformatics tutorials
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sassy Public
Forked from RagnarGrootKoerkamp/sassyFast approximate string searching
Rust MIT License UpdatedOct 29, 2025 -
ggetrs Public
Efficient querying of biological databases
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geomux Public
hypergeometric testing of guide RNA identity to assign cell barcodes to a guide identity
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crispr_screen Public
Efficient Differential Expression and Gene Aggregation for CRISPR screens.
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scipy Public
Forked from scipy/scipySciPy library main repository
Python BSD 3-Clause "New" or "Revised" License UpdatedSep 16, 2025 -
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deacon Public
Forked from bede/deaconFASTX search and [host] depletion using minimizers
Rust MIT License UpdatedAug 16, 2025 -
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bedrs Public
bedtools-like functionality for interval sets in rust
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scPRINT Public
Forked from cantinilab/scPRINTsingle cell foundation model for Gene network inference and more
Jupyter Notebook MIT License UpdatedAug 4, 2025 -
disambiseq Public
Create unambiguous one-off mismatch libraries for DNA sequences
Rust MIT License UpdatedJul 31, 2025 -
uv Public
Forked from astral-sh/uvAn extremely fast Python package and project manager, written in Rust.
Rust Apache License 2.0 UpdatedJul 10, 2025 -
facet Public
Forked from facet-rs/facetRust reflection, serialization, deserialization, pretty printing, etc. — the last proc macro you should need
Rust Apache License 2.0 UpdatedMay 10, 2025 -
minimap2-rs Public
Forked from jguhlin/minimap2-rsRust bindings to minimap2 library
Jupyter Notebook Other UpdatedMay 9, 2025 -
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dirio Public
a simple CLI to track and report disk usage over some subcommand runtime
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graph6-rs Public
a rust library for graph6 formatted files from NAUTY
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fxtools Public
a collection of CLI utilities for processing fasta/fastq (FASTX) files.
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