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Achievements

Achievement: Pull Sharkx4Achievement: Pair ExtraordinaireAchievement: StarstruckAchievement: QuickdrawAchievement: YOLOAchievement: Arctic Code Vault Contributor

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noamteyssier/README.md

Hello!

I'm Noam Teyssier, a Senior Computational Biologist at insitro.

I was formally a Bioinformatics Scientist at the Arc Institute and initially did my PhD in the Kampmann Lab at UCSF.

I work at the intersection of functional genomics, machine learning, and gene regulation in the context of neurodegeneration. I also build rusty bioinformatics tools.

I'm an advocate for open source and share all the tools I've developed during my personal research.

Pinned Loading

  1. ArcInstitute/binseq ArcInstitute/binseq Public

    A high efficiency binary format for sequencing data

    Rust 102 6

  2. ArcInstitute/bqtools ArcInstitute/bqtools Public

    A command line utilty for working with BINSEQ files

    Rust 38 3

  3. ArcInstitute/xsra ArcInstitute/xsra Public

    An efficient CLI to extract sequences from the SRA

    Rust 122 12

  4. gia gia Public

    gia: Genomic Interval Arithmetic

    Rust 66 3

  5. paraseq paraseq Public

    A minimal copy fastq and fasta reader built for parallel support and paired end processing

    Rust 42 4

  6. ArcInstitute/cell-eval ArcInstitute/cell-eval Public

    Comprehensive suite for evaluating perturbation prediction models

    Python 130 47