GitHub - nogaleslab/AutoAlign: 2D reference-free analysis using a topology representing network for single particle cryo-electron microscopy data

Name		Name	Last commit message	Last commit date
compile		compile
CAN		CAN
CAN_queue.csh		CAN_queue.csh
README		README
auto_align_filt_100312		auto_align_filt_100312
auto_align_filt_101013e		auto_align_filt_101013e
auto_align_queue		auto_align_queue
incore_prep_queue.csh		incore_prep_queue.csh
mra_queue.csh		mra_queue.csh
pretreat_queue.csh		pretreat_queue.csh

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These are the scripts needed to run AutoAlign on a single workstation or on a cluster.

The auto_align_queue script is the wrapper that will run CAN on a Sun Grid Engines cluster whereas auto_align_101013e is the wrapper you need to run CAN on a single linux workstation.  

To compile CAN, see /compile folder.

To run on a cluster, make sure you have all the 'queue.csh' scripts in the same working directory as auto_align_queue.