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FUNctional analysis worKflows Interface

Python 4 1 Updated Jul 23, 2025

🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.

Python 245 25 Updated Jul 8, 2024

Python package to perform enrichment analysis from omics data.

Python 245 34 Updated Dec 16, 2025

PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)

Jupyter Notebook 281 64 Updated Feb 17, 2025

Gene Set Enrichment Analysis in Python

Python 680 137 Updated Dec 17, 2025

A modern theming library for Tkinter that adds sleek, responsive styles inspired by Bootstrap. Includes ready-to-use widgets, 20+ themes, and tools for building beautiful, cross-platform desktop ap…

Python 2,497 463 Updated Dec 22, 2025

PROGENY Python implementation

Jupyter Notebook 12 3 Updated Apr 5, 2022

Dorothea package in Python

Jupyter Notebook 11 3 Updated Apr 5, 2022

Quantitative proteomics workflow

R 15 4 Updated Sep 30, 2022

Multiview Intercellular SpaTial modeling framework

R 71 13 Updated Jun 6, 2025

Multiscale simulation of multi-cellular system

C++ 28 11 Updated Jul 31, 2020

Collection of Python functions and classes designed to make data scientists' life easier.

Python 3 5 Updated Oct 22, 2024
C++ 13 11 Updated Jan 16, 2019

:atom: The hackable text editor

JavaScript 60,940 17,314 Updated Jan 3, 2023

Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotations and intercellular communication roles.

Python 155 49 Updated Dec 22, 2025