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FUNctional analysis worKflows Interface

Python 4 1 Updated Jul 23, 2025

🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.

Python 252 25 Updated Jan 29, 2026

Python package to perform enrichment analysis from omics data.

Python 253 35 Updated Feb 2, 2026

PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)

Jupyter Notebook 288 65 Updated Feb 17, 2025

Gene Set Enrichment Analysis in Python

Python 689 136 Updated Dec 17, 2025

A modern theming library for Tkinter that adds sleek, responsive styles inspired by Bootstrap. Includes ready-to-use widgets, 20+ themes, and tools for building beautiful, cross-platform desktop ap…

Python 2,549 461 Updated Jan 25, 2026

PROGENY Python implementation

Jupyter Notebook 12 3 Updated Apr 5, 2022

Dorothea package in Python

Jupyter Notebook 11 3 Updated Apr 5, 2022

Quantitative proteomics workflow

R 15 4 Updated Sep 30, 2022

Multiview Intercellular SpaTial modeling framework

R 71 13 Updated Jan 15, 2026

Multiscale simulation of multi-cellular system

C++ 28 11 Updated Jul 31, 2020

Collection of Python functions and classes designed to make data scientists' life easier.

Python 3 5 Updated Oct 22, 2024
C++ 13 11 Updated Jan 16, 2019

:atom: The hackable text editor

JavaScript 61,009 17,303 Updated Jan 3, 2023

Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotations and intercellular communication roles.

Python 157 49 Updated Jan 28, 2026