Public development project of the LAMMPS MD software package

A lattice Boltzmann code for complex fluids

An implementation of Abraham et al's (2007) algorithm for allocation of student projects

A collection of tools to generate, convert and analyse oxDNA configurations

A new version of the code to simulate the oxDNA/oxRNA models, now equipped with Python bindings

Python package to generate parameters and configurations based on cgNA+

For best reading of the website use

oxDNA configuration viewer

A C++ library to implement the "virtual-move" Monte Carlo algorithm for approximating the dynamical evolution of systems of strongly interacting overdamped particles.

OpenMM is a toolkit for molecular simulation using high performance GPU code.

Associative memory, Water mediated, Structure and Energy Model (AWSEM) protein simulation code

oxDNA/oxRNA code that implements Anisotropic Network Model representation of proteins, allowing for simulations of hybrid protein-DNA/RNA nanostructures as well as biological complexes on CPU and GPU

Python script which collates PDF comments and markings.

Strathclyde University LaTeX beamer template